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WDR5
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.2 nTPM
HPA:18.2 nTPM
GTEx:19.7 nTPM
FANTOM5:65.0 Scaled Tags Per Million
Pig:11.4 nTPM
Mouse:19.5 nTPM
Allen mouse:5.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.3
2289 Male, age 61, right hemisphere 18.3
1781 Male, age 74, unknown 17.0
1854 Male, age 80, left hemisphere 16.9
2846 Female, age 79, unknown 16.7
1857 Female, age 85, left hemisphere 16.0
2290 Female, age 72, unknown 16.0
2288 Male, age 75, left hemisphere 15.4
2481 Female, age 94, left hemisphere 14.3
Claustrum
nTPM: 18.2
2645 Female, age 72, unknown 20.0
2568 Male, age 61, both hemispheres 19.5
2198 Male, age 80, both hemispheres 18.8
2284 Female, age 91, both hemispheres 18.6
2196 Female, age 79, unknown 17.8
2392 Female, age 94, both hemispheres 17.6
2292 Female, age 85, both hemispheres 17.5
2491 Male, age 75, both hemispheres 17.3
1956 Male, age 74, unknown 16.6
Globus pallidus, externus
nTPM: 15.6
2646 Male, age 61, right hemisphere 17.6
2567 Female, age 72, unknown 17.0
2772 Female, age 79, unknown 14.9
1996 Male, age 80, right hemisphere 14.4
2395 Male, age 75, both hemispheres 13.9
Globus pallidus, internus
nTPM: 15.4
2287 Male, age 75, right hemisphere 16.6
2566 Female, age 72, unknown 16.4
2778 Female, age 91, both hemispheres 15.5
2037 Male, age 80, right hemisphere 15.3
1818 Male, age 74, unknown 14.9
2111 Female, age 85, right hemisphere 14.9
2483 Female, age 94, right hemisphere 14.5
Nucleus accumbens
nTPM: 17.0
2824 Male, age 61, right hemisphere 18.8
1856 Female, age 91, right hemisphere 18.3
1783 Male, age 74, unknown 17.7
1806 Female, age 85, left hemisphere 17.0
2698 Female, age 72, unknown 16.6
2732 Male, age 80, right hemisphere 16.5
2391 Female, age 94, left hemisphere 15.5
2286 Male, age 75, left hemisphere 15.3
Nucleus basalis of Meynert
nTPM: 16.1
2484 Female, age 94, left hemisphere 17.0
2569 Male, age 61, both hemispheres 16.8
2393 Male, age 80, right hemisphere 15.5
2821 Male, age 75, both hemispheres 15.1
Nucleus of the diagonal band
nTPM: 17.7
2195 Female, age 85, both hemispheres 18.5
1979 Male, age 74, unknown 18.4
2029 Male, age 61, right hemisphere 18.1
2775 Male, age 80, right hemisphere 17.6
1812 Female, age 91, both hemispheres 15.9
Olfactory tubercle
nTPM: 17.4
1998 Female, age 91, both hemispheres 18.4
2856 Male, age 75, right hemisphere 17.9
2487 Female, age 94, left hemisphere 16.8
1846 Male, age 80, right hemisphere 16.7
Putamen
nTPM: 16.7
1838 Male, age 80, right hemisphere 17.6
2466 Female, age 79, unknown 17.3
2489 Female, age 72, unknown 17.1
1937 Female, age 91, right hemisphere 16.9
2647 Male, age 75, left hemisphere 16.4
2482 Female, age 94, left hemisphere 16.0
1829 Male, age 74, unknown 15.8
Septal nuclei
nTPM: 17.0
2031 Female, age 72, unknown 19.3
1960 Male, age 74, unknown 18.7
2629 Female, age 94, right hemisphere 17.7
2059 Female, age 85, both hemispheres 17.0
2009 Female, age 91, both hemispheres 15.9
2394 Male, age 61, left hemisphere 15.5
2199 Male, age 80, right hemisphere 14.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 19.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.1
Samples: 246

Max nTPM: 24.3
Min nTPM: 10.6
Std nTPM: 2.0
Median nTPM: 16.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 24.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 23.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 21.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 20.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 20.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 19.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 19.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 19.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 19.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 19.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 19.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.7
Samples: 246

Max nTPM: 34.9
Min nTPM: 11.5
Std nTPM: 3.9
Median nTPM: 19.2
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 34.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 33.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 33.0
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 31.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 31.6
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 30.8
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 28.5
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 28.5
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 27.6
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 26.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 26.1
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Brain - Putamen (basal ganglia)
Average nTPM: 16.2
Samples: 205

Max nTPM: 24.2
Min nTPM: 10.5
Std nTPM: 2.0
Median nTPM: 16.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 24.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 23.5
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 20.9
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 20.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 20.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 20.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 20.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 19.8
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 19.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 19.8
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 19.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 65.0
FF:10164-103B2 76 years, female 65.0
Globus pallidus
Scaled Tags Per Million: 53.8
FF:10161-103A8 76 years, female 55.6
FF:10175-103C4 60 years, female 52.0
Nucleus accumbens
Scaled Tags Per Million: 47.9
FF:10037-101F1 23-56 years, mixed 47.9
Putamen
Scaled Tags Per Million: 44.3
FF:10176-103C5 60 years, female 44.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.4
Pig sample Sample description nTPM
Caudate
nTPM: 10.5
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.3
Sample A Female 9.6
Sample B Female 11.3
Sample C Male 11.8
Sample D Male 9.3
Putamen
nTPM: 11.4
Samples: 4

Max nTPM: 12.8
Min nTPM: 9.5
Sample A Female 11.6
Sample B Female 9.5
Sample C Male 12.8
Sample D Male 11.7
Septum
nTPM: 10.4
Samples: 4

Max nTPM: 11.5
Min nTPM: 9.4
Sample A Female 11.2
Sample B Female 9.4
Sample C Male 11.5
Sample D Male 9.6
Ventral pallidum
nTPM: 10.6
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.3
Sample A Female 9.3
Sample B Female 11.9
Sample C Male 11.8
Sample D Male 9.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.5
Samples: 4

Max nTPM: 21.6
Min nTPM: 18.7
Sample A Male 18.7
Sample B Male 18.8
Sample C Female 21.6
Sample D Female 18.8
Septum
nTPM: 17.7
Samples: 4

Max nTPM: 18.7
Min nTPM: 16.4
Sample A Male 18.5
Sample B Male 17.3
Sample C Female 16.4
Sample D Female 18.7
Ventral forebrain
nTPM: 19.2
Samples: 4

Max nTPM: 20.8
Min nTPM: 17.7
Sample A Male 20.4
Sample B Male 17.7
Sample C Female 17.7
Sample D Female 20.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.3
227159 Antisense, RP_040604_01_G09, Mouse strain C57BL/6J (56 days, male) 9.2
68203484 Antisense, RP_041208_01_C04, Mouse strain C57BL/6J (56 days, male) 1.4
Pallidum
Expression energy: 5.4
227159 Antisense, RP_040604_01_G09, Mouse strain C57BL/6J (56 days, male) 8.6
68203484 Antisense, RP_041208_01_C04, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.