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CD47
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.5 nTPM
HPA:40.5 nTPM
GTEx:37.6 nTPM
FANTOM5:109.4 Scaled Tags Per Million
Pig:66.1 nTPM
Mouse:61.0 nTPM
Allen mouse:13.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.8
2411 Female, age 72, unknown 46.4
1870 Female, age 42, unknown 38.8
1827 Male, age 72, unknown 36.6
2019 Male, age 18, unknown 35.4
1830 Male, age 51, unknown 32.5
1833 Male, age 53, unknown 30.8
2219 Male, age 76, both hemispheres 29.5
2828 Female, age 72, unknown 28.4
2666 Male, age 74, left hemisphere 21.9
2586 Male, age 75, left hemisphere 17.5
Dorsal raphe nucleus
nTPM: 36.0
2750 Male, age 76, both hemispheres 44.0
2298 Female, age 72, unknown 40.2
2047 Male, age 72, unknown 36.7
2016 Female, age 72, unknown 30.1
1828 Male, age 53, unknown 28.9
Inferior colliculus
nTPM: 30.4
2097 Female, age 72, unknown 35.4
1848 Female, age 42, unknown 32.0
1890 Male, age 53, unknown 29.9
2849 Male, age 72, unknown 24.5
Median raphe nucleus
nTPM: 36.0
2220 Male, age 76, midline 36.0
Pedunculopontine tegmental nucleus
nTPM: 40.5
2338 Male, age 61, both hemispheres 47.9
1921 Female, age 85, both hemispheres 38.0
2334 Male, age 80, both hemispheres 35.5
Periaquaductal grey, anterior
nTPM: 32.1
1947 Male, age 18, unknown 43.0
1795 Male, age 51, unknown 28.8
2502 Female, age 75, unknown 24.5
Periaquaductal grey, dorsal
nTPM: 28.9
2464 Female, age 72, unknown 32.5
1840 Male, age 53, unknown 29.2
2850 Male, age 76, both hemispheres 29.2
1831 Male, age 72, unknown 24.8
Periaquaductal grey, lateral
nTPM: 33.3
2272 Male, age 74, both hemispheres 43.6
2053 Male, age 18, unknown 32.7
2140 Male, age 76, both hemispheres 23.4
Pretectal area
nTPM: 35.5
2273 Male, age 74, both hemispheres 44.3
2667 Female, age 75, unknown 40.7
1816 Male, age 51, unknown 40.5
2007 Male, age 72, unknown 40.2
1815 Male, age 53, unknown 39.7
1944 Female, age 72, unknown 38.7
1817 Female, age 42, unknown 36.9
2224 Female, age 72, unknown 31.4
2316 Male, age 76, right hemisphere 28.2
2825 Male, age 18, unknown 25.9
2407 Male, age 75, both hemispheres 24.0
Red nucleus
nTPM: 30.7
1821 Female, age 72, unknown 40.3
2823 Male, age 76, right hemisphere 36.2
1865 Male, age 51, unknown 34.9
2725 Female, age 75, unknown 33.7
1954 Female, age 42, unknown 33.0
1904 Male, age 53, unknown 32.5
2503 Female, age 72, unknown 29.8
2785 Male, age 18, unknown 28.6
2769 Male, age 72, unknown 28.5
2227 Male, age 72, unknown 25.8
2588 Male, age 74, left hemisphere 22.7
2584 Male, age 75, left hemisphere 22.0
Substantia nigra
nTPM: 34.7
2409 Female, age 72, unknown 43.0
1889 Female, age 72, unknown 42.0
2590 Female, age 75, unknown 37.6
1916 Female, age 42, unknown 37.0
2241 Male, age 72, unknown 36.8
1851 Male, age 51, unknown 35.7
1941 Male, age 53, unknown 35.4
2583 Male, age 75, right hemisphere 27.9
2699 Male, age 18, unknown 26.1
2665 Male, age 74, both hemispheres 25.3
Superior colliculus
nTPM: 33.0
1913 Female, age 42, unknown 40.4
1895 Male, age 76, right hemisphere 40.2
2587 Male, age 74, left hemisphere 38.1
1995 Male, age 72, unknown 36.7
2261 Male, age 18, unknown 36.6
2087 Female, age 72, unknown 36.0
1796 Male, age 53, unknown 34.1
2668 Female, age 75, unknown 28.0
1839 Male, age 51, unknown 27.7
2664 Male, age 75, both hemispheres 12.4
Ventral tegmental area
nTPM: 32.9
2410 Female, age 72, unknown 40.1
2223 Female, age 72, unknown 37.1
1915 Female, age 42, unknown 32.5
2218 Male, age 76, both hemispheres 31.1
2021 Male, age 53, unknown 29.2
1942 Male, age 51, unknown 27.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.6
Samples: 139

Max nTPM: 66.4
Min nTPM: 18.4
Std nTPM: 9.4
Median nTPM: 35.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 66.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 64.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 62.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 59.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 57.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 56.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 55.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 54.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 54.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 53.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 53.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.4
FF:10158-103A5 76 years, female 109.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.1
Pig sample Sample description nTPM
Midbrain
nTPM: 66.1
Samples: 4

Max nTPM: 114.9
Min nTPM: 47.5
Sample A Female 53.0
Sample B Female 49.1
Sample C Male 114.9
Sample D Male 47.5
Periaqueductal gray
nTPM: 40.2
Samples: 3

Max nTPM: 44.3
Min nTPM: 35.9
Sample B Female 40.3
Sample C Male 44.3
Sample D Male 35.9
Substantia nigra
nTPM: 45.1
Samples: 4

Max nTPM: 50.2
Min nTPM: 39.4
Sample A Female 50.2
Sample B Female 41.9
Sample C Male 48.7
Sample D Male 39.4
Superior colliculi
nTPM: 58.0
Samples: 4

Max nTPM: 86.1
Min nTPM: 41.5
Sample A Female 41.5
Sample B Female 50.4
Sample C Male 86.1
Sample D Male 54.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.0
Samples: 4

Max nTPM: 66.9
Min nTPM: 54.7
Sample A Male 54.7
Sample B Male 60.9
Sample C Female 66.9
Sample D Female 61.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.7
323180 Antisense, RP_040617_02_B04, Mouse strain C57BL/6J (56 days, male) 13.7
357100 Antisense, RP_040617_02_B04, Mouse strain C57BL/6J (56 days, male) 10.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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