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ZNF239
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.1 nTPM
HPA:4.1 nTPM
GTEx:2.7 nTPM
FANTOM5:5.3 Scaled Tags Per Million
Pig:22.9 nTPM
Mouse:28.4 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA046679
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 4.1
Sample id Sample description nTPM
Hippocampus
nTPM: 3.8
2621 Female, age 67, right hemisphere 4.2
1911 Female, age 85, right hemisphere 3.9
2148 Female, age 91, left hemisphere 3.9
1898 Male, age 80, left hemisphere 3.7
1855 Male, age 76, left hemisphere 3.6
2529 Female, age 94, left hemisphere 3.3
Dentate gyrus
nTPM: 3.6
2531 Female, age 67, both hemispheres 4.0
1927 Female, age 91, both hemispheres 3.9
2010 Male, age 76, both hemispheres 3.6
2246 Female, age 85, both hemispheres 3.6
2528 Male, age 74, both hemispheres 3.6
2530 Female, age 94, left hemisphere 3.0
Entorhinal gyrus
nTPM: 3.8
2764 Male, age 80, right hemisphere 4.0
1787 Male, age 76, left hemisphere 3.9
1938 Female, age 85, left hemisphere 3.9
2613 Female, age 94, left hemisphere 3.9
2117 Female, age 91, right hemisphere 3.6
2686 Male, age 75, right hemisphere 3.6
Hippocampus, CA1
nTPM: 3.7
2749 Male, age 80, left hemisphere 3.9
2045 Male, age 76, both hemispheres 3.8
2527 Male, age 74, both hemispheres 3.8
2082 Female, age 91, right hemisphere 3.6
1873 Female, age 85, both hemispheres 3.5
Hippocampus, CA2
nTPM: 3.7
2249 Male, age 74, both hemispheres 4.3
1892 Male, age 76, both hemispheres 3.9
1940 Female, age 85, left hemisphere 3.6
2113 Female, age 91, right hemisphere 3.6
2437 Female, age 94, left hemisphere 3.5
1963 Male, age 80, left hemisphere 3.4
Hippocampus, CA3
nTPM: 3.8
2137 Male, age 80, left hemisphere 4.1
1867 Male, age 76, both hemispheres 3.9
1891 Female, age 85, both hemispheres 3.8
2861 Female, age 67, both hemispheres 3.8
2620 Female, age 94, left hemisphere 3.7
2436 Male, age 74, both hemispheres 3.4
Parahippocampal cortex
nTPM: 3.9
1850 Male, age 80, both hemispheres 4.1
2018 Male, age 76, both hemispheres 4.1
2693 Female, age 94, both hemispheres 4.1
1933 Female, age 85, both hemispheres 3.9
1990 Female, age 91, right hemisphere 3.9
2245 Female, age 91, both hemispheres 3.9
2250 Female, age 67, right hemisphere 3.9
2532 Female, age 72, left hemisphere 3.9
2692 Male, age 74, both hemispheres 3.9
2622 Female, age 67, right hemisphere 3.7
Perirhinal gyrus
nTPM: 4.1
1847 Female, age 91, left hemisphere 4.6
1794 Male, age 80, right hemisphere 4.2
2848 Male, age 76, right hemisphere 4.1
1841 Female, age 85, right hemisphere 3.9
2521 Female, age 94, right hemisphere 3.8
Subiculum
nTPM: 3.6
2042 Male, age 76, both hemispheres 3.8
1977 Female, age 85, both hemispheres 3.7
2438 Female, age 94, left hemisphere 3.5
2619 Male, age 74, both hemispheres 3.5
1901 Male, age 80, both hemispheres 3.4
2729 Female, age 91, right hemisphere 3.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 2.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 2.7
Samples: 197

Max nTPM: 5.0
Min nTPM: 1.0
Std nTPM: 0.7
Median nTPM: 2.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 5.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 4.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 4.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 4.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 4.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 4.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 4.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 4.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 4.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 3.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 3.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5.3
FF:10153-102I9 76 years, female 6.4
FF:10169-103B7 60 years, female 4.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 22.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 22.9
Samples: 4

Max nTPM: 24.9
Min nTPM: 19.4
Sample A Female 23.5
Sample B Female 23.8
Sample C Male 19.4
Sample D Male 24.9
Entorhinal cortex
nTPM: 18.7
Samples: 4

Max nTPM: 18.9
Min nTPM: 18.4
Sample A Female 18.8
Sample B Female 18.8
Sample C Male 18.4
Sample D Male 18.9
Subiculum
nTPM: 20.3
Samples: 4

Max nTPM: 24.4
Min nTPM: 16.1
Sample A Female 24.4
Sample B Female 20.4
Sample C Male 20.4
Sample D Male 16.1
Ventral hippocampus
nTPM: 20.5
Samples: 4

Max nTPM: 23.2
Min nTPM: 19.4
Sample A Female 19.5
Sample B Female 20.0
Sample C Male 19.4
Sample D Male 23.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 28.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.5
Samples: 4

Max nTPM: 30.4
Min nTPM: 25.2
Sample A Male 29.6
Sample B Male 30.4
Sample C Female 25.2
Sample D Female 28.6
Hippocampal formation
nTPM: 25.6
Samples: 4

Max nTPM: 27.8
Min nTPM: 22.4
Sample A Male 25.9
Sample B Male 26.2
Sample C Female 27.8
Sample D Female 22.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
72728 Antisense, RP_040407_01_A11, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.