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NHLRC2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:5.1 nTPM
HPA:5.1 nTPM
GTEx:3.1 nTPM
FANTOM5:19.8 Scaled Tags Per Million
Pig:7.4 nTPM
Mouse:4.7 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038493
Glial cells Low
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.9
2290 Female, age 72, unknown 4.2
2288 Male, age 75, left hemisphere 4.1
2481 Female, age 94, left hemisphere 4.1
1857 Female, age 85, left hemisphere 4.0
2846 Female, age 79, unknown 4.0
1854 Male, age 80, left hemisphere 3.9
2289 Male, age 61, right hemisphere 3.7
1781 Male, age 74, unknown 2.9
Claustrum
nTPM: 3.2
2392 Female, age 94, both hemispheres 4.6
2292 Female, age 85, both hemispheres 4.0
1956 Male, age 74, unknown 3.6
2196 Female, age 79, unknown 3.2
2284 Female, age 91, both hemispheres 3.1
2491 Male, age 75, both hemispheres 2.7
2568 Male, age 61, both hemispheres 2.7
2198 Male, age 80, both hemispheres 2.5
2645 Female, age 72, unknown 2.5
Globus pallidus, externus
nTPM: 4.4
1996 Male, age 80, right hemisphere 4.9
2646 Male, age 61, right hemisphere 4.6
2567 Female, age 72, unknown 4.5
2395 Male, age 75, both hemispheres 4.2
2772 Female, age 79, unknown 3.8
Globus pallidus, internus
nTPM: 5.1
2111 Female, age 85, right hemisphere 6.1
2287 Male, age 75, right hemisphere 5.6
2778 Female, age 91, both hemispheres 5.2
1818 Male, age 74, unknown 5.1
2037 Male, age 80, right hemisphere 4.9
2483 Female, age 94, right hemisphere 4.7
2566 Female, age 72, unknown 4.1
Nucleus accumbens
nTPM: 4.2
2286 Male, age 75, left hemisphere 4.6
2391 Female, age 94, left hemisphere 4.5
2732 Male, age 80, right hemisphere 4.5
2824 Male, age 61, right hemisphere 4.5
2698 Female, age 72, unknown 4.2
1806 Female, age 85, left hemisphere 3.9
1856 Female, age 91, right hemisphere 3.7
1783 Male, age 74, unknown 3.4
Nucleus basalis of Meynert
nTPM: 4.3
2569 Male, age 61, both hemispheres 4.8
2393 Male, age 80, right hemisphere 4.5
2484 Female, age 94, left hemisphere 4.1
2821 Male, age 75, both hemispheres 3.7
Nucleus of the diagonal band
nTPM: 3.1
1979 Male, age 74, unknown 4.3
1812 Female, age 91, both hemispheres 3.0
2029 Male, age 61, right hemisphere 2.9
2195 Female, age 85, both hemispheres 2.8
2775 Male, age 80, right hemisphere 2.6
Olfactory tubercle
nTPM: 3.3
2856 Male, age 75, right hemisphere 3.9
1846 Male, age 80, right hemisphere 3.5
2487 Female, age 94, left hemisphere 3.2
1998 Female, age 91, both hemispheres 2.5
Putamen
nTPM: 3.9
1838 Male, age 80, right hemisphere 4.1
1937 Female, age 91, right hemisphere 4.1
2647 Male, age 75, left hemisphere 4.1
2482 Female, age 94, left hemisphere 4.0
1829 Male, age 74, unknown 3.8
2489 Female, age 72, unknown 3.7
2466 Female, age 79, unknown 3.4
Septal nuclei
nTPM: 3.3
2199 Male, age 80, right hemisphere 4.9
2394 Male, age 61, left hemisphere 4.1
2009 Female, age 91, both hemispheres 3.2
2031 Female, age 72, unknown 2.9
2059 Female, age 85, both hemispheres 2.8
2629 Female, age 94, right hemisphere 2.8
1960 Male, age 74, unknown 2.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.1
Samples: 246

Max nTPM: 5.3
Min nTPM: 1.2
Std nTPM: 0.8
Median nTPM: 3.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 5.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 5.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 5.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 5.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 4.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 4.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 4.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 4.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 4.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 4.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 4.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.1
Samples: 246

Max nTPM: 6.1
Min nTPM: 1.4
Std nTPM: 0.7
Median nTPM: 3.0
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 6.1
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 5.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 5.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 5.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 5.2
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 5.1
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 5.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 4.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 4.7
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 4.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 4.6
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Brain - Putamen (basal ganglia)
Average nTPM: 3.0
Samples: 205

Max nTPM: 5.9
Min nTPM: 1.3
Std nTPM: 0.7
Median nTPM: 3.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 5.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 5.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 5.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 4.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 4.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 4.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 4.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 4.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 4.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 4.4
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 4.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.3
FF:10164-103B2 76 years, female 18.3
Globus pallidus
Scaled Tags Per Million: 18.8
FF:10161-103A8 76 years, female 23.4
FF:10175-103C4 60 years, female 14.2
Nucleus accumbens
Scaled Tags Per Million: 15.1
FF:10037-101F1 23-56 years, mixed 15.1
Putamen
Scaled Tags Per Million: 19.8
FF:10176-103C5 60 years, female 19.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.4
Pig sample Sample description nTPM
Caudate
nTPM: 6.3
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.6
Sample A Female 7.3
Sample B Female 5.6
Sample C Male 5.8
Sample D Male 6.6
Putamen
nTPM: 7.2
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.9
Sample A Female 8.2
Sample B Female 5.9
Sample C Male 8.2
Sample D Male 6.5
Septum
nTPM: 7.4
Samples: 4

Max nTPM: 8.0
Min nTPM: 6.7
Sample A Female 7.7
Sample B Female 6.7
Sample C Male 8.0
Sample D Male 7.0
Ventral pallidum
nTPM: 6.7
Samples: 4

Max nTPM: 7.1
Min nTPM: 6.3
Sample A Female 6.8
Sample B Female 6.3
Sample C Male 7.1
Sample D Male 6.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.8
Samples: 4

Max nTPM: 4.9
Min nTPM: 4.6
Sample A Male 4.8
Sample B Male 4.9
Sample C Female 4.7
Sample D Female 4.6
Septum
nTPM: 4.3
Samples: 4

Max nTPM: 4.6
Min nTPM: 4.2
Sample A Male 4.2
Sample B Male 4.2
Sample C Female 4.3
Sample D Female 4.6
Ventral forebrain
nTPM: 4.1
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.9
Sample A Male 4.0
Sample B Male 4.0
Sample C Female 3.9
Sample D Female 4.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70300535 Antisense, RP_050607_01_G04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70300535 Antisense, RP_050607_01_G04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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