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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.4 nTPM
HPA:43.4 nTPM
GTEx:64.2 nTPM
FANTOM5:70.2 Scaled Tags Per Million
Pig:52.6 nTPM
Mouse:79.8 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.2
2586 Male, age 75, left hemisphere 42.1
2019 Male, age 18, unknown 41.0
2219 Male, age 76, both hemispheres 38.7
1833 Male, age 53, unknown 38.0
2411 Female, age 72, unknown 37.9
2828 Female, age 72, unknown 37.4
1870 Female, age 42, unknown 37.2
1827 Male, age 72, unknown 36.8
2666 Male, age 74, left hemisphere 36.5
1830 Male, age 51, unknown 36.3
Dorsal raphe nucleus
nTPM: 39.2
2298 Female, age 72, unknown 41.7
1828 Male, age 53, unknown 40.3
2016 Female, age 72, unknown 40.1
2047 Male, age 72, unknown 37.9
2750 Male, age 76, both hemispheres 36.0
Inferior colliculus
nTPM: 41.3
2097 Female, age 72, unknown 45.4
1890 Male, age 53, unknown 42.3
1848 Female, age 42, unknown 39.6
2849 Male, age 72, unknown 38.1
Median raphe nucleus
nTPM: 36.5
2220 Male, age 76, midline 36.5
Pedunculopontine tegmental nucleus
nTPM: 35.8
2334 Male, age 80, both hemispheres 36.4
1921 Female, age 85, both hemispheres 35.5
2338 Male, age 61, both hemispheres 35.5
Periaquaductal grey, anterior
nTPM: 38.5
2502 Female, age 75, unknown 40.8
1795 Male, age 51, unknown 39.6
1947 Male, age 18, unknown 35.2
Periaquaductal grey, dorsal
nTPM: 40.6
2464 Female, age 72, unknown 41.4
1840 Male, age 53, unknown 41.0
1831 Male, age 72, unknown 40.1
2850 Male, age 76, both hemispheres 40.0
Periaquaductal grey, lateral
nTPM: 37.5
2272 Male, age 74, both hemispheres 38.2
2053 Male, age 18, unknown 37.5
2140 Male, age 76, both hemispheres 36.8
Pretectal area
nTPM: 40.0
1944 Female, age 72, unknown 43.7
1816 Male, age 51, unknown 43.3
1817 Female, age 42, unknown 42.8
1815 Male, age 53, unknown 42.4
2007 Male, age 72, unknown 41.6
2273 Male, age 74, both hemispheres 40.3
2224 Female, age 72, unknown 39.4
2667 Female, age 75, unknown 39.1
2825 Male, age 18, unknown 38.0
2407 Male, age 75, both hemispheres 35.3
2316 Male, age 76, right hemisphere 34.5
Red nucleus
nTPM: 38.7
1821 Female, age 72, unknown 41.3
1954 Female, age 42, unknown 40.7
2503 Female, age 72, unknown 40.2
1904 Male, age 53, unknown 39.7
2785 Male, age 18, unknown 39.0
2227 Male, age 72, unknown 38.9
1865 Male, age 51, unknown 38.5
2725 Female, age 75, unknown 38.3
2769 Male, age 72, unknown 37.5
2584 Male, age 75, left hemisphere 37.0
2588 Male, age 74, left hemisphere 37.0
2823 Male, age 76, right hemisphere 36.6
Substantia nigra
nTPM: 43.4
2409 Female, age 72, unknown 50.0
1916 Female, age 42, unknown 46.4
2241 Male, age 72, unknown 45.7
1889 Female, age 72, unknown 45.4
2699 Male, age 18, unknown 44.5
1851 Male, age 51, unknown 43.1
2590 Female, age 75, unknown 40.9
2665 Male, age 74, both hemispheres 40.9
2583 Male, age 75, right hemisphere 39.3
1941 Male, age 53, unknown 37.8
Superior colliculus
nTPM: 39.9
1995 Male, age 72, unknown 43.7
2087 Female, age 72, unknown 41.7
2261 Male, age 18, unknown 40.9
2587 Male, age 74, left hemisphere 40.7
2668 Female, age 75, unknown 40.3
1796 Male, age 53, unknown 40.2
2664 Male, age 75, both hemispheres 39.8
1913 Female, age 42, unknown 38.8
1839 Male, age 51, unknown 37.0
1895 Male, age 76, right hemisphere 35.5
Ventral tegmental area
nTPM: 40.9
2410 Female, age 72, unknown 43.0
1915 Female, age 42, unknown 42.1
1942 Male, age 51, unknown 41.5
2223 Female, age 72, unknown 39.6
2218 Male, age 76, both hemispheres 39.5
2021 Male, age 53, unknown 39.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.2
Samples: 139

Max nTPM: 122.8
Min nTPM: 27.3
Std nTPM: 17.9
Median nTPM: 60.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 122.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 121.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 107.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 106.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 104.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 101.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 100.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 99.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 95.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 95.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 90.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.2
FF:10158-103A5 76 years, female 70.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.6
Pig sample Sample description nTPM
Midbrain
nTPM: 47.9
Samples: 4

Max nTPM: 52.9
Min nTPM: 41.1
Sample A Female 52.9
Sample B Female 47.1
Sample C Male 50.5
Sample D Male 41.1
Periaqueductal gray
nTPM: 39.5
Samples: 3

Max nTPM: 41.8
Min nTPM: 35.9
Sample B Female 41.8
Sample C Male 40.8
Sample D Male 35.9
Substantia nigra
nTPM: 48.1
Samples: 4

Max nTPM: 58.6
Min nTPM: 41.5
Sample A Female 58.6
Sample B Female 48.2
Sample C Male 44.1
Sample D Male 41.5
Superior colliculi
nTPM: 52.6
Samples: 4

Max nTPM: 61.0
Min nTPM: 46.1
Sample A Female 54.7
Sample B Female 48.5
Sample C Male 61.0
Sample D Male 46.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 79.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.9
Samples: 4

Max nTPM: 84.0
Min nTPM: 75.5
Sample A Male 75.5
Sample B Male 78.6
Sample C Female 81.3
Sample D Female 84.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69838751 Antisense, RP_050321_04_F06, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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