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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		156.333
RNA expressioni
Consensus:61.4 nTPM
HPA:61.4 nTPM
GTEx:59.7 nTPM
FANTOM5:104.0 Scaled Tags Per Million
Pig:90.3 nTPM
Mouse:144.4 nTPM
Allen mouse:9.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002954
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA002954
Hippocampal formation mean intensity 156.333
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 47.929
Molecular layer of the dentate gyrus 26.282
Granular dentate gyrus 95.890
CA1 - oriens layer 30.295
CA1 - pyramidal layer 97.391
CA1 - radiatum layer 25.219
CA2 - oriens layer 28.033
CA2 - pyramidal layer 63.670
CA2 - radiatum layer 50.591
CA3 - oriens layer 49.123
CA3 - pyramidal layer 156.333
CA3 - radiatum layer 51.131
Stratum lucidum 60.019
Lacunosum moleculare 21.231
Subiculum 72.449

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 61.4
Sample id Sample description nTPM
Hippocampus
nTPM: 60.4
1898 Male, age 80, left hemisphere 76.8
1855 Male, age 76, left hemisphere 68.6
1911 Female, age 85, right hemisphere 58.2
2529 Female, age 94, left hemisphere 55.8
2148 Female, age 91, left hemisphere 53.0
2621 Female, age 67, right hemisphere 49.9
Dentate gyrus
nTPM: 58.4
2010 Male, age 76, both hemispheres 68.8
2530 Female, age 94, left hemisphere 64.0
1927 Female, age 91, both hemispheres 60.9
2246 Female, age 85, both hemispheres 55.9
2528 Male, age 74, both hemispheres 50.6
2531 Female, age 67, both hemispheres 50.1
Entorhinal gyrus
nTPM: 57.2
1938 Female, age 85, left hemisphere 67.3
1787 Male, age 76, left hemisphere 59.3
2686 Male, age 75, right hemisphere 56.7
2764 Male, age 80, right hemisphere 56.1
2117 Female, age 91, right hemisphere 55.0
2613 Female, age 94, left hemisphere 48.6
Hippocampus, CA1
nTPM: 61.2
2749 Male, age 80, left hemisphere 72.8
1873 Female, age 85, both hemispheres 68.7
2045 Male, age 76, both hemispheres 63.2
2082 Female, age 91, right hemisphere 51.7
2527 Male, age 74, both hemispheres 49.7
Hippocampus, CA2
nTPM: 60.6
1892 Male, age 76, both hemispheres 77.5
1963 Male, age 80, left hemisphere 73.7
1940 Female, age 85, left hemisphere 55.8
2437 Female, age 94, left hemisphere 53.0
2113 Female, age 91, right hemisphere 52.4
2249 Male, age 74, both hemispheres 51.6
Hippocampus, CA3
nTPM: 55.5
1867 Male, age 76, both hemispheres 70.0
2137 Male, age 80, left hemisphere 64.5
1891 Female, age 85, both hemispheres 62.3
2861 Female, age 67, both hemispheres 49.0
2620 Female, age 94, left hemisphere 43.9
2436 Male, age 74, both hemispheres 43.2
Parahippocampal cortex
nTPM: 55.7
1850 Male, age 80, both hemispheres 72.7
1933 Female, age 85, both hemispheres 63.7
2018 Male, age 76, both hemispheres 57.3
1990 Female, age 91, right hemisphere 56.6
2532 Female, age 72, left hemisphere 54.3
2245 Female, age 91, both hemispheres 52.0
2693 Female, age 94, both hemispheres 52.0
2250 Female, age 67, right hemisphere 51.0
2692 Male, age 74, both hemispheres 50.8
2622 Female, age 67, right hemisphere 46.8
Perirhinal gyrus
nTPM: 61.4
1841 Female, age 85, right hemisphere 66.3
2848 Male, age 76, right hemisphere 64.2
1847 Female, age 91, left hemisphere 63.6
1794 Male, age 80, right hemisphere 63.5
2521 Female, age 94, right hemisphere 49.5
Subiculum
nTPM: 54.9
1901 Male, age 80, both hemispheres 61.5
1977 Female, age 85, both hemispheres 58.2
2042 Male, age 76, both hemispheres 57.7
2729 Female, age 91, right hemisphere 55.7
2438 Female, age 94, left hemisphere 53.0
2619 Male, age 74, both hemispheres 43.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 59.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 59.7
Samples: 197

Max nTPM: 155.3
Min nTPM: 19.5
Std nTPM: 17.3
Median nTPM: 56.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 155.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 122.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 118.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 118.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 116.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 104.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 104.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 100.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 100.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 98.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 85.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 104.0
FF:10169-103B7 60 years, female 121.3
FF:10153-102I9 76 years, female 86.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 90.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 90.3
Samples: 4

Max nTPM: 118.2
Min nTPM: 61.3
Sample A Female 118.2
Sample B Female 87.7
Sample C Male 94.1
Sample D Male 61.3
Entorhinal cortex
nTPM: 66.6
Samples: 4

Max nTPM: 79.0
Min nTPM: 57.0
Sample A Female 57.0
Sample B Female 79.0
Sample C Male 72.2
Sample D Male 58.2
Subiculum
nTPM: 75.8
Samples: 4

Max nTPM: 92.9
Min nTPM: 66.2
Sample A Female 92.9
Sample B Female 68.6
Sample C Male 66.2
Sample D Male 75.5
Ventral hippocampus
nTPM: 73.2
Samples: 4

Max nTPM: 86.3
Min nTPM: 63.4
Sample A Female 86.3
Sample B Female 69.6
Sample C Male 63.4
Sample D Male 73.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 144.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 126.5
Samples: 4

Max nTPM: 140.3
Min nTPM: 113.7
Sample A Male 113.7
Sample B Male 120.8
Sample C Female 131.1
Sample D Female 140.3
Hippocampal formation
nTPM: 144.4
Samples: 4

Max nTPM: 153.7
Min nTPM: 135.6
Sample A Male 148.3
Sample B Male 139.8
Sample C Female 153.7
Sample D Female 135.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.2
1726 Antisense, RP_040526_02_F03, Mouse strain C57BL/6J (56 days, male) 9.2
1727 Antisense, RP_040526_02_F03, Mouse strain C57BL/6J (56 days, male) 8.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.