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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:20.0 nTPM
HPA:20.0 nTPM
GTEx:17.7 nTPM
FANTOM5:20.8 Scaled Tags Per Million
Pig:17.4 nTPM
Mouse:4.2 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA015643
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.0
Sample id Sample description nTPM
Hippocampus
nTPM: 19.2
2529 Female, age 94, left hemisphere 23.2
2621 Female, age 67, right hemisphere 19.9
2148 Female, age 91, left hemisphere 18.7
1911 Female, age 85, right hemisphere 18.6
1898 Male, age 80, left hemisphere 18.5
1855 Male, age 76, left hemisphere 16.6
Dentate gyrus
nTPM: 19.7
2530 Female, age 94, left hemisphere 23.4
2531 Female, age 67, both hemispheres 20.1
2528 Male, age 74, both hemispheres 19.9
2246 Female, age 85, both hemispheres 19.1
2010 Male, age 76, both hemispheres 18.8
1927 Female, age 91, both hemispheres 17.2
Entorhinal gyrus
nTPM: 19.5
2686 Male, age 75, right hemisphere 22.2
2117 Female, age 91, right hemisphere 20.9
2613 Female, age 94, left hemisphere 19.8
1787 Male, age 76, left hemisphere 19.4
2764 Male, age 80, right hemisphere 17.6
1938 Female, age 85, left hemisphere 17.2
Hippocampus, CA1
nTPM: 17.5
2527 Male, age 74, both hemispheres 21.0
2082 Female, age 91, right hemisphere 19.7
1873 Female, age 85, both hemispheres 16.6
2045 Male, age 76, both hemispheres 15.3
2749 Male, age 80, left hemisphere 14.8
Hippocampus, CA2
nTPM: 19.3
1940 Female, age 85, left hemisphere 22.6
2437 Female, age 94, left hemisphere 20.8
2113 Female, age 91, right hemisphere 19.6
1963 Male, age 80, left hemisphere 19.1
2249 Male, age 74, both hemispheres 18.1
1892 Male, age 76, both hemispheres 15.5
Hippocampus, CA3
nTPM: 18.5
2861 Female, age 67, both hemispheres 23.1
1891 Female, age 85, both hemispheres 19.5
2436 Male, age 74, both hemispheres 18.1
2620 Female, age 94, left hemisphere 17.8
2137 Male, age 80, left hemisphere 17.0
1867 Male, age 76, both hemispheres 15.6
Parahippocampal cortex
nTPM: 19.3
2692 Male, age 74, both hemispheres 22.0
2622 Female, age 67, right hemisphere 21.7
2250 Female, age 67, right hemisphere 20.7
1990 Female, age 91, right hemisphere 20.4
2245 Female, age 91, both hemispheres 18.8
2018 Male, age 76, both hemispheres 18.4
2693 Female, age 94, both hemispheres 18.1
2532 Female, age 72, left hemisphere 17.8
1850 Male, age 80, both hemispheres 17.4
1933 Female, age 85, both hemispheres 17.4
Perirhinal gyrus
nTPM: 18.0
2848 Male, age 76, right hemisphere 19.6
2521 Female, age 94, right hemisphere 18.7
1841 Female, age 85, right hemisphere 18.0
1794 Male, age 80, right hemisphere 17.3
1847 Female, age 91, left hemisphere 16.4
Subiculum
nTPM: 20.0
2619 Male, age 74, both hemispheres 22.3
2042 Male, age 76, both hemispheres 20.9
2729 Female, age 91, right hemisphere 20.7
2438 Female, age 94, left hemisphere 19.3
1901 Male, age 80, both hemispheres 18.5
1977 Female, age 85, both hemispheres 18.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.7
Samples: 197

Max nTPM: 48.8
Min nTPM: 5.5
Std nTPM: 7.4
Median nTPM: 16.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 48.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 41.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 40.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 38.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 37.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 34.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 34.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 32.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 32.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 32.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 32.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.8
FF:10153-102I9 76 years, female 22.9
FF:10169-103B7 60 years, female 18.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 17.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 15.6
Samples: 4

Max nTPM: 20.5
Min nTPM: 9.6
Sample A Female 18.8
Sample B Female 13.4
Sample C Male 20.5
Sample D Male 9.6
Entorhinal cortex
nTPM: 15.1
Samples: 4

Max nTPM: 18.6
Min nTPM: 11.2
Sample A Female 18.6
Sample B Female 15.2
Sample C Male 15.5
Sample D Male 11.2
Subiculum
nTPM: 16.6
Samples: 4

Max nTPM: 17.4
Min nTPM: 14.5
Sample A Female 17.4
Sample B Female 14.5
Sample C Male 17.2
Sample D Male 17.3
Ventral hippocampus
nTPM: 17.4
Samples: 4

Max nTPM: 24.2
Min nTPM: 13.1
Sample A Female 16.0
Sample B Female 13.1
Sample C Male 24.2
Sample D Male 16.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 4.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.2
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.7
Sample A Male 4.2
Sample B Male 4.7
Sample C Female 3.7
Sample D Female 4.2
Hippocampal formation
nTPM: 3.5
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.0
Sample A Male 3.1
Sample B Male 4.3
Sample C Female 3.0
Sample D Female 3.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
112644736 Antisense, RP_110421_01_B03, Mouse strain C57BL/6J (56 days, male) 1.2
1161 Antisense, RP_040407_02_G04, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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