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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.1 nTPM
HPA:9.1 nTPM
GTEx:6.5 nTPM
FANTOM5:44.3 Scaled Tags Per Million
Pig:22.8 nTPM
Mouse:19.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.3
2219 Male, age 76, both hemispheres 9.0
1827 Male, age 72, unknown 8.0
1833 Male, age 53, unknown 7.8
1830 Male, age 51, unknown 7.7
2586 Male, age 75, left hemisphere 7.4
2828 Female, age 72, unknown 7.3
1870 Female, age 42, unknown 7.0
2019 Male, age 18, unknown 6.7
2411 Female, age 72, unknown 6.4
2666 Male, age 74, left hemisphere 5.9
Dorsal raphe nucleus
nTPM: 6.1
1828 Male, age 53, unknown 6.7
2016 Female, age 72, unknown 6.7
2047 Male, age 72, unknown 5.8
2750 Male, age 76, both hemispheres 5.7
2298 Female, age 72, unknown 5.4
Inferior colliculus
nTPM: 9.1
2849 Male, age 72, unknown 10.2
2097 Female, age 72, unknown 8.9
1890 Male, age 53, unknown 8.8
1848 Female, age 42, unknown 8.6
Median raphe nucleus
nTPM: 6.8
2220 Male, age 76, midline 6.8
Pedunculopontine tegmental nucleus
nTPM: 6.8
1921 Female, age 85, both hemispheres 7.4
2334 Male, age 80, both hemispheres 6.7
2338 Male, age 61, both hemispheres 6.2
Periaquaductal grey, anterior
nTPM: 6.7
2502 Female, age 75, unknown 8.0
1947 Male, age 18, unknown 6.3
1795 Male, age 51, unknown 5.9
Periaquaductal grey, dorsal
nTPM: 8.8
1831 Male, age 72, unknown 9.8
2850 Male, age 76, both hemispheres 9.2
1840 Male, age 53, unknown 8.5
2464 Female, age 72, unknown 7.7
Periaquaductal grey, lateral
nTPM: 7.5
2140 Male, age 76, both hemispheres 8.2
2053 Male, age 18, unknown 7.6
2272 Male, age 74, both hemispheres 6.5
Pretectal area
nTPM: 8.2
1817 Female, age 42, unknown 10.1
1816 Male, age 51, unknown 9.5
1944 Female, age 72, unknown 9.3
1815 Male, age 53, unknown 9.2
2007 Male, age 72, unknown 8.1
2667 Female, age 75, unknown 8.0
2825 Male, age 18, unknown 7.6
2273 Male, age 74, both hemispheres 7.3
2407 Male, age 75, both hemispheres 7.2
2224 Female, age 72, unknown 6.9
2316 Male, age 76, right hemisphere 6.7
Red nucleus
nTPM: 7.4
2503 Female, age 72, unknown 9.1
1821 Female, age 72, unknown 7.9
1865 Male, age 51, unknown 7.7
1954 Female, age 42, unknown 7.5
2227 Male, age 72, unknown 7.5
2588 Male, age 74, left hemisphere 7.4
1904 Male, age 53, unknown 7.3
2785 Male, age 18, unknown 7.2
2823 Male, age 76, right hemisphere 7.2
2725 Female, age 75, unknown 7.0
2769 Male, age 72, unknown 6.8
2584 Male, age 75, left hemisphere 6.6
Substantia nigra
nTPM: 7.4
2409 Female, age 72, unknown 8.7
2699 Male, age 18, unknown 8.6
1889 Female, age 72, unknown 8.2
2583 Male, age 75, right hemisphere 8.0
2590 Female, age 75, unknown 7.3
2665 Male, age 74, both hemispheres 7.2
1941 Male, age 53, unknown 7.1
1916 Female, age 42, unknown 6.6
1851 Male, age 51, unknown 6.4
2241 Male, age 72, unknown 5.7
Superior colliculus
nTPM: 7.8
1913 Female, age 42, unknown 8.6
2087 Female, age 72, unknown 8.6
1839 Male, age 51, unknown 8.1
2261 Male, age 18, unknown 8.1
1995 Male, age 72, unknown 7.9
1796 Male, age 53, unknown 7.7
2587 Male, age 74, left hemisphere 7.7
1895 Male, age 76, right hemisphere 7.3
2668 Female, age 75, unknown 7.1
2664 Male, age 75, both hemispheres 6.5
Ventral tegmental area
nTPM: 7.0
2218 Male, age 76, both hemispheres 8.1
2223 Female, age 72, unknown 7.9
2410 Female, age 72, unknown 7.3
1942 Male, age 51, unknown 6.7
1915 Female, age 42, unknown 6.3
2021 Male, age 53, unknown 5.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.5
Samples: 139

Max nTPM: 12.6
Min nTPM: 4.0
Std nTPM: 1.2
Median nTPM: 6.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 12.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 9.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 9.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 9.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 9.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 9.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 8.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 8.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 8.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 8.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 8.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.3
FF:10158-103A5 76 years, female 44.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.8
Pig sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 26.3
Min nTPM: 19.4
Sample A Female 19.4
Sample B Female 21.1
Sample C Male 26.3
Sample D Male 24.4
Periaqueductal gray
nTPM: 20.5
Samples: 3

Max nTPM: 20.7
Min nTPM: 20.0
Sample B Female 20.7
Sample C Male 20.7
Sample D Male 20.0
Substantia nigra
nTPM: 19.5
Samples: 4

Max nTPM: 21.3
Min nTPM: 18.5
Sample A Female 18.6
Sample B Female 18.5
Sample C Male 21.3
Sample D Male 19.6
Superior colliculi
nTPM: 20.9
Samples: 4

Max nTPM: 22.8
Min nTPM: 18.4
Sample A Female 20.2
Sample B Female 18.4
Sample C Male 22.8
Sample D Male 22.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 21.3
Min nTPM: 17.8
Sample A Male 17.8
Sample B Male 21.3
Sample C Female 20.4
Sample D Female 19.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74277439 Antisense, RP_051130_03_F04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.