Single cell type - ADARB1 - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	ADARB1
Gene descriptionⁱ Full gene name according to HGNC.	Adenosine deaminase RNA specific B1
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes Enzymes Human disease related genes Plasma proteins Potential drug targets
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	7

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Neurons & Oligodendrocytes - Synaptic function (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Inhibitory neurons, Horizontal cells, Bipolar cells, Excitatory neurons)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low immune cell specificity
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in some
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Cell line enhanced (HeLa, HHSteC)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Inhibitory neurons, Horizontal cells, Bipolar cells, Excitatory neurons)

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

ADARB1 is part of cluster 8 Neurons & Oligodendrocytes - Synaptic function with confidenceⁱ 0.99
719 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
CPLX1	Complexin 1	0.6476	8
TMTC1	Transmembrane O-mannosyltransferase targeting cadherins 1	0.6393	8
FAM78B	Family with sequence similarity 78 member B	0.6150	8
KCNC1	Potassium voltage-gated channel subfamily C member 1	0.6142	8
VAMP1	Vesicle associated membrane protein 1	0.5837	8
OPRD1	Opioid receptor delta 1	0.5828	21
CNTNAP3B	Contactin associated protein family member 3B	0.5674	8
OVCH1	Ovochymase 1	0.5670	8
LRRC38	Leucine rich repeat containing 38	0.5656	37
FAM219A	Family with sequence similarity 219 member A	0.5646	62
KCNJ6	Potassium inwardly rectifying channel subfamily J member 6	0.5538	62
SLC45A1	Solute carrier family 45 member 1	0.5509	14
BEND6	BEN domain containing 6	0.5499	8
KCNAB3	Potassium voltage-gated channel subfamily A regulatory beta subunit 3	0.5409	62
MAGEE1	MAGE family member E1	0.5388	62

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	29.0 nTPM
Breast	36.3 nTPM
Adipose tissue	21.6 nTPM

Alveolar cells type 1	0.0 nTPM
Lung	0.0 nTPM

Alveolar cells type 2	1.1 nTPM
Lung	1.1 nTPM

Astrocytes	10.7 nTPM
Brain	10.7 nTPM

B-cells	12.0 nTPM
PBMC	28.5 nTPM
Adipose tissue	16.5 nTPM
Colon	16.0 nTPM
Bone marrow	13.9 nTPM
Breast	10.7 nTPM
Spleen	10.4 nTPM
Lymph node	9.6 nTPM
Liver	6.5 nTPM
Kidney	4.8 nTPM
Stomach	2.7 nTPM

Dendritic cells	5.9 nTPM
Adipose tissue	10.1 nTPM
Breast	7.6 nTPM
PBMC	0.0 nTPM

Endothelial cells	21.2 nTPM
Heart muscle	46.0 nTPM
Ovary	37.8 nTPM
Skeletal muscle	26.3 nTPM
Testis	24.6 nTPM
Breast	23.1 nTPM
Endometrium	19.8 nTPM
Skin	19.7 nTPM
Pancreas	19.3 nTPM
Liver	18.3 nTPM
Esophagus	17.6 nTPM
Lung	12.5 nTPM
Prostate	11.9 nTPM
Placenta	10.8 nTPM
Eye	8.9 nTPM

Fibroblasts	9.4 nTPM
Skeletal muscle	20.7 nTPM
Skin	17.1 nTPM
Heart muscle	13.7 nTPM
Adipose tissue	12.1 nTPM
Placenta	10.5 nTPM
Breast	9.6 nTPM
Prostate	6.7 nTPM
Ovary	4.4 nTPM
Lung	3.4 nTPM
Stomach	3.0 nTPM
Esophagus	2.1 nTPM

Intestinal goblet cells	0.9 nTPM
Colon	1.4 nTPM
Rectum	0.9 nTPM
Small intestine	0.4 nTPM

Macrophages	3.2 nTPM
Stomach	8.8 nTPM
Breast	8.0 nTPM
Skeletal muscle	6.8 nTPM
Kidney	3.8 nTPM
Endometrium	3.0 nTPM
Adipose tissue	3.0 nTPM
Ovary	2.9 nTPM
Pancreas	2.5 nTPM
Bone marrow	2.5 nTPM
Prostate	2.2 nTPM
Lung	1.8 nTPM
Esophagus	1.6 nTPM
Testis	1.2 nTPM
PBMC	0.0 nTPM
Spleen	0.0 nTPM

Paneth cells	0.1 nTPM
Rectum	0.2 nTPM
Colon	0.0 nTPM
Small intestine	0.0 nTPM

Plasma cells	4.0 nTPM
Adipose tissue	16.1 nTPM
Bone marrow	1.7 nTPM
Stomach	1.5 nTPM
Spleen	1.0 nTPM
Esophagus	0.0 nTPM

Respiratory ciliated cells	0.7 nTPM
Bronchus	1.4 nTPM
Lung	0.0 nTPM

Smooth muscle cells	12.7 nTPM
Breast	33.5 nTPM
Endometrium	22.4 nTPM
Skin	22.3 nTPM
Heart muscle	20.5 nTPM
Prostate	11.9 nTPM
Skeletal muscle	9.6 nTPM
Ovary	7.2 nTPM
Adipose tissue	5.2 nTPM
Bronchus	3.8 nTPM
Pancreas	3.1 nTPM
Esophagus	0.0 nTPM

T-cells	13.7 nTPM
Adipose tissue	33.0 nTPM
Breast	30.3 nTPM
Skeletal muscle	27.3 nTPM
Skin	19.3 nTPM
Liver	16.1 nTPM
Colon	15.2 nTPM
Ovary	13.4 nTPM
Endometrium	13.2 nTPM
Stomach	11.8 nTPM
Spleen	10.4 nTPM
PBMC	10.1 nTPM
Bone marrow	8.1 nTPM
Lymph node	7.0 nTPM
Esophagus	6.6 nTPM
Lung	6.1 nTPM
Kidney	4.2 nTPM
Prostate	0.0 nTPM

Basal keratinocytes	11.1 nTPM
Skin	11.1 nTPM

Basal squamous epithelial cells	2.8 nTPM
Esophagus	2.8 nTPM

Cytotrophoblasts	0.5 nTPM
Placenta	0.5 nTPM

Exocrine glandular cells	0.5 nTPM
Pancreas	0.5 nTPM

Undifferentiated cells	1.2 nTPM
Rectum	1.6 nTPM
Colon	1.4 nTPM
Small intestine	0.6 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC