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RAB40C
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.0 nTPM
HPA:10.0 nTPM
GTEx:24.4 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:15.1 nTPM
Mouse:26.0 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 10.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.3
1781 Male, age 74, unknown 11.8
2846 Female, age 79, unknown 11.6
2290 Female, age 72, unknown 11.2
2289 Male, age 61, right hemisphere 10.0
1857 Female, age 85, left hemisphere 9.8
2288 Male, age 75, left hemisphere 7.4
1854 Male, age 80, left hemisphere 7.1
2481 Female, age 94, left hemisphere 5.6
Claustrum
nTPM: 10.0
2568 Male, age 61, both hemispheres 14.8
2645 Female, age 72, unknown 12.9
2491 Male, age 75, both hemispheres 11.4
2284 Female, age 91, both hemispheres 11.0
2198 Male, age 80, both hemispheres 9.5
1956 Male, age 74, unknown 9.2
2196 Female, age 79, unknown 8.5
2392 Female, age 94, both hemispheres 7.1
2292 Female, age 85, both hemispheres 5.6
Globus pallidus, externus
nTPM: 1.0
2646 Male, age 61, right hemisphere 3.3
2395 Male, age 75, both hemispheres 0.9
2772 Female, age 79, unknown 0.7
1996 Male, age 80, right hemisphere 0.0
2567 Female, age 72, unknown 0.0
Globus pallidus, internus
nTPM: 0.4
2483 Female, age 94, right hemisphere 2.3
2287 Male, age 75, right hemisphere 0.5
2566 Female, age 72, unknown 0.3
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 6.7
1783 Male, age 74, unknown 13.3
1806 Female, age 85, left hemisphere 9.8
2824 Male, age 61, right hemisphere 8.4
1856 Female, age 91, right hemisphere 7.4
2286 Male, age 75, left hemisphere 5.8
2698 Female, age 72, unknown 4.7
2732 Male, age 80, right hemisphere 2.8
2391 Female, age 94, left hemisphere 1.6
Nucleus basalis of Meynert
nTPM: 6.0
2484 Female, age 94, left hemisphere 8.8
2393 Male, age 80, right hemisphere 6.2
2569 Male, age 61, both hemispheres 4.6
2821 Male, age 75, both hemispheres 4.5
Nucleus of the diagonal band
nTPM: 8.6
2029 Male, age 61, right hemisphere 12.5
2775 Male, age 80, right hemisphere 9.8
1812 Female, age 91, both hemispheres 8.2
2195 Female, age 85, both hemispheres 8.2
1979 Male, age 74, unknown 4.3
Olfactory tubercle
nTPM: 9.6
2487 Female, age 94, left hemisphere 11.8
1998 Female, age 91, both hemispheres 10.0
2856 Male, age 75, right hemisphere 9.5
1846 Male, age 80, right hemisphere 7.2
Putamen
nTPM: 9.5
2466 Female, age 79, unknown 13.5
1829 Male, age 74, unknown 12.2
2489 Female, age 72, unknown 10.4
1838 Male, age 80, right hemisphere 9.8
2647 Male, age 75, left hemisphere 9.2
1937 Female, age 91, right hemisphere 6.8
2482 Female, age 94, left hemisphere 4.9
Septal nuclei
nTPM: 7.4
2031 Female, age 72, unknown 13.4
1960 Male, age 74, unknown 12.0
2629 Female, age 94, right hemisphere 7.7
2009 Female, age 91, both hemispheres 5.8
2059 Female, age 85, both hemispheres 5.7
2394 Male, age 61, left hemisphere 5.2
2199 Male, age 80, right hemisphere 2.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.4
Samples: 246

Max nTPM: 57.2
Min nTPM: 5.8
Std nTPM: 11.0
Median nTPM: 23.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 57.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 54.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 49.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 47.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 47.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 47.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 46.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 46.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 46.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 46.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 42.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.2
Samples: 246

Max nTPM: 52.2
Min nTPM: 3.0
Std nTPM: 9.8
Median nTPM: 25.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 52.2
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 48.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 47.1
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 44.6
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 42.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 41.9
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 41.5
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 41.2
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 41.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 40.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 40.0
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Brain - Putamen (basal ganglia)
Average nTPM: 23.4
Samples: 205

Max nTPM: 66.7
Min nTPM: 4.1
Std nTPM: 11.1
Median nTPM: 21.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 66.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 53.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 53.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 51.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 50.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 49.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 46.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 46.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 45.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 43.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 42.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.8
FF:10164-103B2 76 years, female 18.8
Globus pallidus
Scaled Tags Per Million: 10.6
FF:10175-103C4 60 years, female 11.8
FF:10161-103A8 76 years, female 9.3
Nucleus accumbens
Scaled Tags Per Million: 27.8
FF:10037-101F1 23-56 years, mixed 27.8
Putamen
Scaled Tags Per Million: 21.7
FF:10176-103C5 60 years, female 21.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.1
Pig sample Sample description nTPM
Caudate
nTPM: 15.1
Samples: 4

Max nTPM: 17.4
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 17.4
Sample C Male 16.4
Sample D Male 14.3
Putamen
nTPM: 13.5
Samples: 4

Max nTPM: 15.9
Min nTPM: 10.6
Sample A Female 10.6
Sample B Female 12.7
Sample C Male 15.9
Sample D Male 14.9
Septum
nTPM: 12.8
Samples: 4

Max nTPM: 14.9
Min nTPM: 10.1
Sample A Female 14.3
Sample B Female 14.9
Sample C Male 10.1
Sample D Male 12.0
Ventral pallidum
nTPM: 13.1
Samples: 4

Max nTPM: 14.7
Min nTPM: 12.4
Sample A Female 12.4
Sample B Female 14.7
Sample C Male 12.6
Sample D Male 12.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 26.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 26.0
Samples: 4

Max nTPM: 31.4
Min nTPM: 19.0
Sample A Male 28.9
Sample B Male 31.4
Sample C Female 19.0
Sample D Female 24.5
Septum
nTPM: 20.7
Samples: 4

Max nTPM: 23.8
Min nTPM: 18.5
Sample A Male 21.5
Sample B Male 19.1
Sample C Female 23.8
Sample D Female 18.5
Ventral forebrain
nTPM: 20.2
Samples: 4

Max nTPM: 26.3
Min nTPM: 16.2
Sample A Male 21.5
Sample B Male 16.7
Sample C Female 26.3
Sample D Female 16.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68196918 Antisense, RP_041116_01_E01, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
68196918 Antisense, RP_041116_01_E01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.