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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:90.9 nTPM
HPA:90.9 nTPM
GTEx:64.0 nTPM
FANTOM5:603.3 Scaled Tags Per Million
Pig:235.4 nTPM
Mouse:279.6 nTPM
Allen mouse:20.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007927Antibody CAB004581
Glial cells MediumLow
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 90.9
Sample id Sample description nTPM
Hippocampus
nTPM: 50.0
2148 Female, age 91, left hemisphere 66.8
2529 Female, age 94, left hemisphere 64.2
1898 Male, age 80, left hemisphere 63.2
2621 Female, age 67, right hemisphere 56.2
1855 Male, age 76, left hemisphere 29.4
1911 Female, age 85, right hemisphere 20.3
Dentate gyrus
nTPM: 53.4
2528 Male, age 74, both hemispheres 93.8
1927 Female, age 91, both hemispheres 76.5
2531 Female, age 67, both hemispheres 61.2
2010 Male, age 76, both hemispheres 39.4
2246 Female, age 85, both hemispheres 24.7
2530 Female, age 94, left hemisphere 24.6
Entorhinal gyrus
nTPM: 66.1
2686 Male, age 75, right hemisphere 88.7
2764 Male, age 80, right hemisphere 79.8
2613 Female, age 94, left hemisphere 76.0
1787 Male, age 76, left hemisphere 66.8
1938 Female, age 85, left hemisphere 48.4
2117 Female, age 91, right hemisphere 36.6
Hippocampus, CA1
nTPM: 64.7
2749 Male, age 80, left hemisphere 91.9
2527 Male, age 74, both hemispheres 78.2
2082 Female, age 91, right hemisphere 59.0
1873 Female, age 85, both hemispheres 47.9
2045 Male, age 76, both hemispheres 46.7
Hippocampus, CA2
nTPM: 52.1
1892 Male, age 76, both hemispheres 75.9
1963 Male, age 80, left hemisphere 56.8
2249 Male, age 74, both hemispheres 56.6
2113 Female, age 91, right hemisphere 53.2
2437 Female, age 94, left hemisphere 51.0
1940 Female, age 85, left hemisphere 18.9
Hippocampus, CA3
nTPM: 61.0
2620 Female, age 94, left hemisphere 119.1
2861 Female, age 67, both hemispheres 87.4
2137 Male, age 80, left hemisphere 73.2
1867 Male, age 76, both hemispheres 45.8
2436 Male, age 74, both hemispheres 30.5
1891 Female, age 85, both hemispheres 10.0
Parahippocampal cortex
nTPM: 51.8
2245 Female, age 91, both hemispheres 83.7
1850 Male, age 80, both hemispheres 74.8
1990 Female, age 91, right hemisphere 68.5
2693 Female, age 94, both hemispheres 56.5
2622 Female, age 67, right hemisphere 52.9
2250 Female, age 67, right hemisphere 48.0
1933 Female, age 85, both hemispheres 41.4
2692 Male, age 74, both hemispheres 35.3
2018 Male, age 76, both hemispheres 29.3
2532 Female, age 72, left hemisphere 27.3
Perirhinal gyrus
nTPM: 90.9
1794 Male, age 80, right hemisphere 114.0
1847 Female, age 91, left hemisphere 108.9
2848 Male, age 76, right hemisphere 100.3
1841 Female, age 85, right hemisphere 74.6
2521 Female, age 94, right hemisphere 56.7
Subiculum
nTPM: 38.1
2438 Female, age 94, left hemisphere 58.3
2729 Female, age 91, right hemisphere 56.4
2619 Male, age 74, both hemispheres 51.3
1977 Female, age 85, both hemispheres 35.9
1901 Male, age 80, both hemispheres 19.6
2042 Male, age 76, both hemispheres 7.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 64.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 64.0
Samples: 197

Max nTPM: 146.5
Min nTPM: 22.5
Std nTPM: 23.3
Median nTPM: 60.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 146.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 139.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 132.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 126.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 124.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 124.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 120.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 115.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 113.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 113.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 111.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 603.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 603.3
FF:10169-103B7 60 years, female 718.8
FF:10153-102I9 76 years, female 487.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 235.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 212.0
Samples: 4

Max nTPM: 263.4
Min nTPM: 165.8
Sample A Female 263.4
Sample B Female 231.6
Sample C Male 187.2
Sample D Male 165.8
Entorhinal cortex
nTPM: 235.4
Samples: 4

Max nTPM: 257.7
Min nTPM: 218.4
Sample A Female 257.7
Sample B Female 225.4
Sample C Male 240.0
Sample D Male 218.4
Subiculum
nTPM: 213.4
Samples: 4

Max nTPM: 288.7
Min nTPM: 165.3
Sample A Female 288.7
Sample B Female 190.5
Sample C Male 208.9
Sample D Male 165.3
Ventral hippocampus
nTPM: 215.8
Samples: 4

Max nTPM: 258.6
Min nTPM: 157.3
Sample A Female 190.1
Sample B Female 157.3
Sample C Male 258.6
Sample D Male 257.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 279.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 279.7
Samples: 4

Max nTPM: 345.6
Min nTPM: 252.4
Sample A Male 266.4
Sample B Male 254.2
Sample C Female 252.4
Sample D Female 345.6
Hippocampal formation
nTPM: 247.4
Samples: 4

Max nTPM: 289.2
Min nTPM: 205.1
Sample A Male 205.1
Sample B Male 280.6
Sample C Female 289.2
Sample D Female 214.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 20.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 20.7
70596059 Antisense, RP_050628_04_A03, Mouse strain C57BL/6J (56 days, male) 23.6
69885690 Antisense, RP_050512_03_C04, Mouse strain C57BL/6J (56 days, male) 17.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.