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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:14.6 nTPM
HPA:14.6 nTPM
GTEx:12.2 nTPM
FANTOM5:25.6 Scaled Tags Per Million
Pig:26.7 nTPM
Mouse:44.9 nTPM
Allen mouse:10.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA027809Antibody HPA027811
Glial cells Not detectedMedium
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.6
Sample id Sample description nTPM
Hippocampus
nTPM: 11.3
1911 Female, age 85, right hemisphere 14.6
2621 Female, age 67, right hemisphere 14.1
1898 Male, age 80, left hemisphere 10.8
2148 Female, age 91, left hemisphere 10.6
2529 Female, age 94, left hemisphere 9.3
1855 Male, age 76, left hemisphere 8.7
Dentate gyrus
nTPM: 10.7
2531 Female, age 67, both hemispheres 16.4
1927 Female, age 91, both hemispheres 12.0
2246 Female, age 85, both hemispheres 11.4
2528 Male, age 74, both hemispheres 8.4
2530 Female, age 94, left hemisphere 8.4
2010 Male, age 76, both hemispheres 7.7
Entorhinal gyrus
nTPM: 10.7
2613 Female, age 94, left hemisphere 16.3
2764 Male, age 80, right hemisphere 11.6
1938 Female, age 85, left hemisphere 11.0
2686 Male, age 75, right hemisphere 10.8
1787 Male, age 76, left hemisphere 7.5
2117 Female, age 91, right hemisphere 6.8
Hippocampus, CA1
nTPM: 14.1
2749 Male, age 80, left hemisphere 25.2
1873 Female, age 85, both hemispheres 13.9
2527 Male, age 74, both hemispheres 11.2
2045 Male, age 76, both hemispheres 10.6
2082 Female, age 91, right hemisphere 9.6
Hippocampus, CA2
nTPM: 10.3
1940 Female, age 85, left hemisphere 11.2
1892 Male, age 76, both hemispheres 10.5
1963 Male, age 80, left hemisphere 10.3
2113 Female, age 91, right hemisphere 10.2
2249 Male, age 74, both hemispheres 10.1
2437 Female, age 94, left hemisphere 9.8
Hippocampus, CA3
nTPM: 14.6
2137 Male, age 80, left hemisphere 25.8
2620 Female, age 94, left hemisphere 17.0
2861 Female, age 67, both hemispheres 16.2
1891 Female, age 85, both hemispheres 10.1
1867 Male, age 76, both hemispheres 9.7
2436 Male, age 74, both hemispheres 8.5
Parahippocampal cortex
nTPM: 11.1
2622 Female, age 67, right hemisphere 14.0
2693 Female, age 94, both hemispheres 13.9
2245 Female, age 91, both hemispheres 13.0
2532 Female, age 72, left hemisphere 12.5
1850 Male, age 80, both hemispheres 11.9
1933 Female, age 85, both hemispheres 11.6
2250 Female, age 67, right hemisphere 9.1
1990 Female, age 91, right hemisphere 8.5
2018 Male, age 76, both hemispheres 8.3
2692 Male, age 74, both hemispheres 7.8
Perirhinal gyrus
nTPM: 12.2
1841 Female, age 85, right hemisphere 14.6
2521 Female, age 94, right hemisphere 13.4
1794 Male, age 80, right hemisphere 12.6
1847 Female, age 91, left hemisphere 11.5
2848 Male, age 76, right hemisphere 8.8
Subiculum
nTPM: 9.4
1901 Male, age 80, both hemispheres 13.8
2729 Female, age 91, right hemisphere 10.3
1977 Female, age 85, both hemispheres 8.6
2438 Female, age 94, left hemisphere 8.5
2042 Male, age 76, both hemispheres 8.3
2619 Male, age 74, both hemispheres 7.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.2
Samples: 197

Max nTPM: 40.5
Min nTPM: 1.4
Std nTPM: 6.0
Median nTPM: 11.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 40.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 28.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 27.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 26.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 26.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 26.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 24.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 24.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 24.7
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 24.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 23.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.6
FF:10153-102I9 76 years, female 30.4
FF:10169-103B7 60 years, female 20.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 26.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 21.6
Samples: 4

Max nTPM: 27.3
Min nTPM: 18.3
Sample A Female 27.3
Sample B Female 21.5
Sample C Male 19.4
Sample D Male 18.3
Entorhinal cortex
nTPM: 26.7
Samples: 4

Max nTPM: 32.1
Min nTPM: 21.6
Sample A Female 27.0
Sample B Female 32.1
Sample C Male 21.6
Sample D Male 26.0
Subiculum
nTPM: 13.5
Samples: 4

Max nTPM: 21.1
Min nTPM: 9.0
Sample A Female 21.1
Sample B Female 10.7
Sample C Male 9.0
Sample D Male 13.3
Ventral hippocampus
nTPM: 15.4
Samples: 4

Max nTPM: 31.7
Min nTPM: 9.6
Sample A Female 9.6
Sample B Female 9.8
Sample C Male 10.6
Sample D Male 31.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 44.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 44.6
Samples: 4

Max nTPM: 54.5
Min nTPM: 36.6
Sample A Male 44.7
Sample B Male 54.5
Sample C Female 36.6
Sample D Female 42.6
Hippocampal formation
nTPM: 44.9
Samples: 4

Max nTPM: 54.3
Min nTPM: 37.6
Sample A Male 41.9
Sample B Male 45.7
Sample C Female 54.3
Sample D Female 37.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.3
74819651 Antisense, RP_060315_02_G07, Mouse strain C57BL/6J (56 days, male) 10.6
69013320 Antisense, RP_050309_02_C05, Mouse strain C57BL/6J (56 days, male) 10.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.