ABOUTMENU
HELP
NEWS
LPAR1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:315.0 nTPM
HPA:315.0 nTPM
GTEx:185.1 nTPM
FANTOM5:388.7 Scaled Tags Per Million
Pig:45.8 nTPM
Mouse:43.5 nTPM
Allen mouse:1.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 315.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 169.6
2288 Male, age 75, left hemisphere 202.2
2846 Female, age 79, unknown 198.2
1854 Male, age 80, left hemisphere 171.0
2290 Female, age 72, unknown 167.1
1781 Male, age 74, unknown 162.4
2289 Male, age 61, right hemisphere 157.2
2481 Female, age 94, left hemisphere 154.9
1857 Female, age 85, left hemisphere 144.0
Claustrum
nTPM: 224.7
2292 Female, age 85, both hemispheres 318.0
1956 Male, age 74, unknown 275.1
2392 Female, age 94, both hemispheres 229.2
2491 Male, age 75, both hemispheres 216.8
2196 Female, age 79, unknown 210.2
2568 Male, age 61, both hemispheres 202.4
2198 Male, age 80, both hemispheres 196.8
2284 Female, age 91, both hemispheres 191.8
2645 Female, age 72, unknown 182.2
Globus pallidus, externus
nTPM: 301.4
2567 Female, age 72, unknown 370.6
1996 Male, age 80, right hemisphere 328.0
2646 Male, age 61, right hemisphere 327.6
2772 Female, age 79, unknown 254.1
2395 Male, age 75, both hemispheres 226.9
Globus pallidus, internus
nTPM: 315.0
2111 Female, age 85, right hemisphere 366.2
2483 Female, age 94, right hemisphere 356.3
2566 Female, age 72, unknown 347.7
2778 Female, age 91, both hemispheres 309.0
1818 Male, age 74, unknown 286.7
2287 Male, age 75, right hemisphere 271.0
2037 Male, age 80, right hemisphere 267.9
Nucleus accumbens
nTPM: 185.0
2698 Female, age 72, unknown 236.5
2732 Male, age 80, right hemisphere 212.7
2391 Female, age 94, left hemisphere 210.0
2286 Male, age 75, left hemisphere 183.1
1806 Female, age 85, left hemisphere 174.1
1783 Male, age 74, unknown 172.1
2824 Male, age 61, right hemisphere 155.1
1856 Female, age 91, right hemisphere 136.2
Nucleus basalis of Meynert
nTPM: 229.0
2569 Male, age 61, both hemispheres 351.2
2821 Male, age 75, both hemispheres 196.7
2484 Female, age 94, left hemisphere 193.9
2393 Male, age 80, right hemisphere 174.4
Nucleus of the diagonal band
nTPM: 128.1
1979 Male, age 74, unknown 137.1
1812 Female, age 91, both hemispheres 132.0
2029 Male, age 61, right hemisphere 125.2
2195 Female, age 85, both hemispheres 123.9
2775 Male, age 80, right hemisphere 122.3
Olfactory tubercle
nTPM: 141.7
2856 Male, age 75, right hemisphere 149.0
1998 Female, age 91, both hemispheres 146.9
2487 Female, age 94, left hemisphere 138.0
1846 Male, age 80, right hemisphere 133.0
Putamen
nTPM: 196.1
2647 Male, age 75, left hemisphere 258.3
2489 Female, age 72, unknown 224.0
1829 Male, age 74, unknown 216.3
2482 Female, age 94, left hemisphere 191.3
1937 Female, age 91, right hemisphere 174.7
2466 Female, age 79, unknown 174.6
1838 Male, age 80, right hemisphere 133.8
Septal nuclei
nTPM: 148.5
2394 Male, age 61, left hemisphere 208.2
2199 Male, age 80, right hemisphere 162.7
2059 Female, age 85, both hemispheres 145.7
2629 Female, age 94, right hemisphere 139.1
2009 Female, age 91, both hemispheres 132.1
2031 Female, age 72, unknown 129.3
1960 Male, age 74, unknown 122.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 185.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 101.1
Samples: 246

Max nTPM: 516.0
Min nTPM: 14.8
Std nTPM: 72.5
Median nTPM: 84.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 516.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 436.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 323.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 321.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 305.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 305.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 303.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 291.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 276.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 275.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 273.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 79.3
Samples: 246

Max nTPM: 548.2
Min nTPM: 5.8
Std nTPM: 83.8
Median nTPM: 51.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 548.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 475.9
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 401.6
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 386.7
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 374.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 358.9
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 339.5
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 316.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 277.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 267.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 260.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 185.1
Samples: 205

Max nTPM: 672.2
Min nTPM: 29.2
Std nTPM: 116.8
Median nTPM: 158.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 672.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 600.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 599.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 588.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 524.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 515.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 488.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 464.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 463.3
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 447.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 432.5
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 388.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 93.0
FF:10164-103B2 76 years, female 93.0
Globus pallidus
Scaled Tags Per Million: 388.7
FF:10161-103A8 76 years, female 426.9
FF:10175-103C4 60 years, female 350.4
Nucleus accumbens
Scaled Tags Per Million: 199.9
FF:10037-101F1 23-56 years, mixed 199.9
Putamen
Scaled Tags Per Million: 67.5
FF:10176-103C5 60 years, female 67.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.8
Pig sample Sample description nTPM
Caudate
nTPM: 15.3
Samples: 4

Max nTPM: 18.1
Min nTPM: 12.7
Sample A Female 18.1
Sample B Female 12.7
Sample C Male 14.4
Sample D Male 16.0
Putamen
nTPM: 45.8
Samples: 4

Max nTPM: 75.3
Min nTPM: 22.5
Sample A Female 75.3
Sample B Female 22.5
Sample C Male 35.8
Sample D Male 49.4
Septum
nTPM: 27.9
Samples: 4

Max nTPM: 32.5
Min nTPM: 18.1
Sample A Female 32.5
Sample B Female 18.1
Sample C Male 29.2
Sample D Male 31.8
Ventral pallidum
nTPM: 36.0
Samples: 4

Max nTPM: 50.7
Min nTPM: 18.7
Sample A Female 18.7
Sample B Female 26.8
Sample C Male 47.9
Sample D Male 50.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 43.1
Samples: 4

Max nTPM: 44.8
Min nTPM: 41.7
Sample A Male 41.7
Sample B Male 41.8
Sample C Female 43.9
Sample D Female 44.8
Septum
nTPM: 43.6
Samples: 4

Max nTPM: 61.0
Min nTPM: 27.2
Sample A Male 27.2
Sample B Male 38.9
Sample C Female 47.1
Sample D Female 61.0
Ventral forebrain
nTPM: 23.9
Samples: 4

Max nTPM: 25.9
Min nTPM: 22.7
Sample A Male 22.7
Sample B Male 23.6
Sample C Female 25.9
Sample D Female 23.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
75749420 Antisense, RP_060518_04_E04, Mouse strain C57BL/6J (56 days, male) 1.1
79556595 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.8
79360278 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 1.0
79556595 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 1.0
75749420 Antisense, RP_060518_04_E04, Mouse strain C57BL/6J (56 days, male) 1.0
79360278 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.