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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.1 nTPM
HPA:13.1 nTPM
GTEx:17.6 nTPM
FANTOM5:183.7 Scaled Tags Per Million
Mouse:62.8 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.9
1870 Female, age 42, unknown 15.9
2411 Female, age 72, unknown 15.5
1830 Male, age 51, unknown 14.4
2019 Male, age 18, unknown 14.0
1833 Male, age 53, unknown 13.5
1827 Male, age 72, unknown 12.2
2666 Male, age 74, left hemisphere 12.0
2219 Male, age 76, both hemispheres 11.8
2828 Female, age 72, unknown 10.0
2586 Male, age 75, left hemisphere 9.9
Dorsal raphe nucleus
nTPM: 11.3
2750 Male, age 76, both hemispheres 14.1
1828 Male, age 53, unknown 11.0
2047 Male, age 72, unknown 10.7
2016 Female, age 72, unknown 10.6
2298 Female, age 72, unknown 10.2
Inferior colliculus
nTPM: 12.5
2097 Female, age 72, unknown 13.6
1848 Female, age 42, unknown 13.0
2849 Male, age 72, unknown 12.0
1890 Male, age 53, unknown 11.4
Median raphe nucleus
nTPM: 12.8
2220 Male, age 76, midline 12.8
Pedunculopontine tegmental nucleus
nTPM: 12.8
2334 Male, age 80, both hemispheres 13.4
1921 Female, age 85, both hemispheres 12.9
2338 Male, age 61, both hemispheres 12.2
Periaquaductal grey, anterior
nTPM: 13.1
1947 Male, age 18, unknown 14.3
2502 Female, age 75, unknown 13.4
1795 Male, age 51, unknown 11.5
Periaquaductal grey, dorsal
nTPM: 11.4
2464 Female, age 72, unknown 12.3
1831 Male, age 72, unknown 11.8
1840 Male, age 53, unknown 11.6
2850 Male, age 76, both hemispheres 10.0
Periaquaductal grey, lateral
nTPM: 10.4
2053 Male, age 18, unknown 11.0
2272 Male, age 74, both hemispheres 11.0
2140 Male, age 76, both hemispheres 9.1
Pretectal area
nTPM: 12.8
2007 Male, age 72, unknown 14.9
1944 Female, age 72, unknown 14.4
1816 Male, age 51, unknown 14.2
1817 Female, age 42, unknown 13.9
1815 Male, age 53, unknown 13.4
2825 Male, age 18, unknown 12.0
2667 Female, age 75, unknown 11.8
2224 Female, age 72, unknown 11.7
2273 Male, age 74, both hemispheres 11.7
2316 Male, age 76, right hemisphere 11.2
2407 Male, age 75, both hemispheres 11.2
Red nucleus
nTPM: 13.1
1821 Female, age 72, unknown 15.0
2503 Female, age 72, unknown 14.8
1954 Female, age 42, unknown 13.3
2785 Male, age 18, unknown 13.2
1904 Male, age 53, unknown 13.1
2823 Male, age 76, right hemisphere 12.9
2725 Female, age 75, unknown 12.7
2588 Male, age 74, left hemisphere 12.6
1865 Male, age 51, unknown 12.5
2584 Male, age 75, left hemisphere 12.4
2227 Male, age 72, unknown 12.3
2769 Male, age 72, unknown 12.2
Substantia nigra
nTPM: 11.6
1889 Female, age 72, unknown 13.9
1941 Male, age 53, unknown 12.7
2241 Male, age 72, unknown 12.5
2409 Female, age 72, unknown 12.5
2583 Male, age 75, right hemisphere 11.9
2590 Female, age 75, unknown 11.7
1851 Male, age 51, unknown 11.1
1916 Female, age 42, unknown 10.4
2665 Male, age 74, both hemispheres 9.9
2699 Male, age 18, unknown 9.6
Superior colliculus
nTPM: 12.1
1913 Female, age 42, unknown 13.1
2587 Male, age 74, left hemisphere 13.0
1895 Male, age 76, right hemisphere 12.8
2668 Female, age 75, unknown 12.8
1839 Male, age 51, unknown 12.5
2087 Female, age 72, unknown 12.5
2261 Male, age 18, unknown 12.0
1995 Male, age 72, unknown 11.7
1796 Male, age 53, unknown 11.0
2664 Male, age 75, both hemispheres 10.1
Ventral tegmental area
nTPM: 12.2
2223 Female, age 72, unknown 14.5
2410 Female, age 72, unknown 12.8
2021 Male, age 53, unknown 11.8
2218 Male, age 76, both hemispheres 11.6
1942 Male, age 51, unknown 11.4
1915 Female, age 42, unknown 11.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.6
Samples: 139

Max nTPM: 40.6
Min nTPM: 7.7
Std nTPM: 5.4
Median nTPM: 16.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 40.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 35.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 31.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 29.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 29.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 27.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 26.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 25.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 25.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 24.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 183.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 183.7
FF:10158-103A5 76 years, female 183.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.8
Samples: 4

Max nTPM: 67.0
Min nTPM: 58.0
Sample A Male 64.5
Sample B Male 67.0
Sample C Female 61.5
Sample D Female 58.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
70227920 Antisense, RP_050524_02_B06, Mouse strain C57BL/6J (56 days, male) 1.5
73931622 Antisense, RP_051214_04_A02, Mouse strain C57BL/6J (56 days, male) 0.3

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