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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:20.4 nTPM
HPA:20.4 nTPM
GTEx:24.5 nTPM
FANTOM5:40.0 Scaled Tags Per Million
Mouse:12.7 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004722Antibody HPA004769
Glial cells Not detectedLow
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.4
Sample id Sample description nTPM
Hippocampus
nTPM: 19.6
2529 Female, age 94, left hemisphere 22.5
1911 Female, age 85, right hemisphere 20.7
2148 Female, age 91, left hemisphere 20.2
1855 Male, age 76, left hemisphere 19.0
2621 Female, age 67, right hemisphere 18.4
1898 Male, age 80, left hemisphere 16.6
Dentate gyrus
nTPM: 20.4
2010 Male, age 76, both hemispheres 21.2
2246 Female, age 85, both hemispheres 21.0
2528 Male, age 74, both hemispheres 20.9
2530 Female, age 94, left hemisphere 20.1
2531 Female, age 67, both hemispheres 19.9
1927 Female, age 91, both hemispheres 19.0
Entorhinal gyrus
nTPM: 19.5
2686 Male, age 75, right hemisphere 21.8
2764 Male, age 80, right hemisphere 21.3
2117 Female, age 91, right hemisphere 19.5
2613 Female, age 94, left hemisphere 19.5
1787 Male, age 76, left hemisphere 18.9
1938 Female, age 85, left hemisphere 16.3
Hippocampus, CA1
nTPM: 19.6
2082 Female, age 91, right hemisphere 23.8
2527 Male, age 74, both hemispheres 20.5
2045 Male, age 76, both hemispheres 19.0
1873 Female, age 85, both hemispheres 18.2
2749 Male, age 80, left hemisphere 16.7
Hippocampus, CA2
nTPM: 19.8
2113 Female, age 91, right hemisphere 21.4
2437 Female, age 94, left hemisphere 21.3
1940 Female, age 85, left hemisphere 21.0
2249 Male, age 74, both hemispheres 19.7
1963 Male, age 80, left hemisphere 18.5
1892 Male, age 76, both hemispheres 16.6
Hippocampus, CA3
nTPM: 19.8
2620 Female, age 94, left hemisphere 24.3
1891 Female, age 85, both hemispheres 20.7
2436 Male, age 74, both hemispheres 20.7
2861 Female, age 67, both hemispheres 19.5
2137 Male, age 80, left hemisphere 17.2
1867 Male, age 76, both hemispheres 16.7
Parahippocampal cortex
nTPM: 19.0
2692 Male, age 74, both hemispheres 21.6
2622 Female, age 67, right hemisphere 21.2
2018 Male, age 76, both hemispheres 21.1
1990 Female, age 91, right hemisphere 20.8
2532 Female, age 72, left hemisphere 19.5
2693 Female, age 94, both hemispheres 18.1
2245 Female, age 91, both hemispheres 17.8
1850 Male, age 80, both hemispheres 17.2
2250 Female, age 67, right hemisphere 16.8
1933 Female, age 85, both hemispheres 16.0
Perirhinal gyrus
nTPM: 17.3
2521 Female, age 94, right hemisphere 18.2
1794 Male, age 80, right hemisphere 17.7
2848 Male, age 76, right hemisphere 17.7
1847 Female, age 91, left hemisphere 17.0
1841 Female, age 85, right hemisphere 15.8
Subiculum
nTPM: 20.1
2619 Male, age 74, both hemispheres 21.5
2729 Female, age 91, right hemisphere 21.4
2042 Male, age 76, both hemispheres 20.5
1901 Male, age 80, both hemispheres 19.6
1977 Female, age 85, both hemispheres 18.8
2438 Female, age 94, left hemisphere 18.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 24.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.5
Samples: 197

Max nTPM: 54.8
Min nTPM: 9.3
Std nTPM: 6.3
Median nTPM: 24.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 54.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 52.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 46.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 42.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 36.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 36.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 36.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 35.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 35.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 34.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 34.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 40.0
FF:10153-102I9 76 years, female 50.7
FF:10169-103B7 60 years, female 29.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.1
Samples: 4

Max nTPM: 15.2
Min nTPM: 8.9
Sample A Male 12.9
Sample B Male 15.2
Sample C Female 11.4
Sample D Female 8.9
Hippocampal formation
nTPM: 12.7
Samples: 4

Max nTPM: 13.2
Min nTPM: 12.4
Sample A Male 12.8
Sample B Male 13.2
Sample C Female 12.4
Sample D Female 12.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
68341579 Antisense, RP_041207_01_G09, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.