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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:28.7 nTPM
HPA:28.7 nTPM
GTEx:21.1 nTPM
FANTOM5:171.3 Scaled Tags Per Million
Pig:58.1 nTPM
Mouse:45.9 nTPM
Allen mouse:11.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA026070
Glial cells High
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 28.7
Sample id Sample description nTPM
Hippocampus
nTPM: 4.1
1898 Male, age 80, left hemisphere 19.0
2621 Female, age 67, right hemisphere 4.0
1855 Male, age 76, left hemisphere 1.8
1911 Female, age 85, right hemisphere 0.0
2148 Female, age 91, left hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 7.5
1927 Female, age 91, both hemispheres 20.0
2531 Female, age 67, both hemispheres 13.9
2010 Male, age 76, both hemispheres 7.4
2246 Female, age 85, both hemispheres 3.5
2528 Male, age 74, both hemispheres 0.0
2530 Female, age 94, left hemisphere 0.0
Entorhinal gyrus
nTPM: 24.4
2613 Female, age 94, left hemisphere 59.9
1938 Female, age 85, left hemisphere 30.3
2764 Male, age 80, right hemisphere 25.5
2686 Male, age 75, right hemisphere 16.2
1787 Male, age 76, left hemisphere 14.4
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 10.4
2749 Male, age 80, left hemisphere 25.9
2045 Male, age 76, both hemispheres 21.3
1873 Female, age 85, both hemispheres 5.0
2082 Female, age 91, right hemisphere 0.0
2527 Male, age 74, both hemispheres 0.0
Hippocampus, CA2
nTPM: 5.7
1892 Male, age 76, both hemispheres 20.9
1963 Male, age 80, left hemisphere 10.9
2437 Female, age 94, left hemisphere 1.6
2249 Male, age 74, both hemispheres 0.6
1940 Female, age 85, left hemisphere 0.0
2113 Female, age 91, right hemisphere 0.0
Hippocampus, CA3
nTPM: 23.8
2436 Male, age 74, both hemispheres 83.8
2620 Female, age 94, left hemisphere 36.2
1867 Male, age 76, both hemispheres 14.3
2137 Male, age 80, left hemisphere 6.8
2861 Female, age 67, both hemispheres 0.9
1891 Female, age 85, both hemispheres 0.6
Parahippocampal cortex
nTPM: 11.5
1990 Female, age 91, right hemisphere 30.9
1850 Male, age 80, both hemispheres 28.4
2693 Female, age 94, both hemispheres 18.6
1933 Female, age 85, both hemispheres 11.7
2250 Female, age 67, right hemisphere 9.3
2532 Female, age 72, left hemisphere 8.2
2245 Female, age 91, both hemispheres 7.0
2622 Female, age 67, right hemisphere 1.4
2692 Male, age 74, both hemispheres 0.1
2018 Male, age 76, both hemispheres 0.0
Perirhinal gyrus
nTPM: 28.7
1847 Female, age 91, left hemisphere 56.8
1794 Male, age 80, right hemisphere 25.5
2521 Female, age 94, right hemisphere 23.4
1841 Female, age 85, right hemisphere 21.7
2848 Male, age 76, right hemisphere 16.4
Subiculum
nTPM: 6.0
1977 Female, age 85, both hemispheres 22.8
2438 Female, age 94, left hemisphere 8.6
1901 Male, age 80, both hemispheres 4.8
2042 Male, age 76, both hemispheres 0.0
2619 Male, age 74, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.1
Samples: 197

Max nTPM: 51.6
Min nTPM: 4.8
Std nTPM: 8.6
Median nTPM: 19.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 51.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 51.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 49.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 42.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 42.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 41.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 40.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 40.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 39.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 38.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 38.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 171.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 171.3
FF:10169-103B7 60 years, female 215.5
FF:10153-102I9 76 years, female 127.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 58.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 41.2
Samples: 4

Max nTPM: 50.3
Min nTPM: 30.8
Sample A Female 50.3
Sample B Female 48.1
Sample C Male 30.8
Sample D Male 35.4
Entorhinal cortex
nTPM: 43.7
Samples: 4

Max nTPM: 47.3
Min nTPM: 40.9
Sample A Female 43.3
Sample B Female 40.9
Sample C Male 47.3
Sample D Male 43.4
Subiculum
nTPM: 54.5
Samples: 4

Max nTPM: 75.9
Min nTPM: 37.8
Sample A Female 75.9
Sample B Female 44.7
Sample C Male 59.4
Sample D Male 37.8
Ventral hippocampus
nTPM: 58.1
Samples: 4

Max nTPM: 89.7
Min nTPM: 37.3
Sample A Female 66.0
Sample B Female 39.3
Sample C Male 89.7
Sample D Male 37.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 45.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 45.9
Samples: 4

Max nTPM: 55.5
Min nTPM: 41.7
Sample A Male 43.1
Sample B Male 41.7
Sample C Female 43.3
Sample D Female 55.5
Hippocampal formation
nTPM: 38.6
Samples: 4

Max nTPM: 45.0
Min nTPM: 31.2
Sample A Male 31.2
Sample B Male 45.0
Sample C Female 44.0
Sample D Female 34.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.0
69289693 Antisense, RP_050407_03_F02, Mouse strain C57BL/6J (56 days, male) 16.6
70793923 Antisense, RP_050712_01_A04, Mouse strain C57BL/6J (56 days, male) 5.4
73512191 Antisense, RP_050712_01_A04, Mouse strain C57BL/6J (56 days, male) 3.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.