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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:21.1 nTPM
HPA:21.1 nTPM
GTEx:16.8 nTPM
FANTOM5:49.7 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:34.6 nTPM
Allen mouse:2.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001395Antibody CAB004607Antibody CAB015834
Glial cells LowMediumLow
Neuronal cells MediumHighHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.1
Sample id Sample description nTPM
Hippocampus
nTPM: 19.9
1898 Male, age 80, left hemisphere 23.2
1855 Male, age 76, left hemisphere 23.1
2148 Female, age 91, left hemisphere 20.0
2529 Female, age 94, left hemisphere 20.0
2621 Female, age 67, right hemisphere 16.9
1911 Female, age 85, right hemisphere 16.0
Dentate gyrus
nTPM: 19.9
2010 Male, age 76, both hemispheres 27.2
2528 Male, age 74, both hemispheres 19.8
2246 Female, age 85, both hemispheres 19.7
1927 Female, age 91, both hemispheres 18.7
2530 Female, age 94, left hemisphere 17.5
2531 Female, age 67, both hemispheres 16.7
Entorhinal gyrus
nTPM: 19.1
1787 Male, age 76, left hemisphere 21.5
2764 Male, age 80, right hemisphere 20.6
2117 Female, age 91, right hemisphere 19.5
1938 Female, age 85, left hemisphere 18.8
2613 Female, age 94, left hemisphere 17.5
2686 Male, age 75, right hemisphere 16.4
Hippocampus, CA1
nTPM: 21.1
2749 Male, age 80, left hemisphere 25.6
2527 Male, age 74, both hemispheres 21.4
2045 Male, age 76, both hemispheres 20.5
1873 Female, age 85, both hemispheres 19.2
2082 Female, age 91, right hemisphere 18.9
Hippocampus, CA2
nTPM: 20.6
1892 Male, age 76, both hemispheres 25.1
2249 Male, age 74, both hemispheres 24.2
1963 Male, age 80, left hemisphere 21.8
2113 Female, age 91, right hemisphere 19.5
2437 Female, age 94, left hemisphere 16.8
1940 Female, age 85, left hemisphere 16.3
Hippocampus, CA3
nTPM: 20.8
1867 Male, age 76, both hemispheres 26.8
2436 Male, age 74, both hemispheres 23.0
2137 Male, age 80, left hemisphere 22.9
2620 Female, age 94, left hemisphere 18.9
1891 Female, age 85, both hemispheres 18.1
2861 Female, age 67, both hemispheres 14.8
Parahippocampal cortex
nTPM: 18.8
1850 Male, age 80, both hemispheres 23.2
2018 Male, age 76, both hemispheres 20.7
2532 Female, age 72, left hemisphere 19.0
2692 Male, age 74, both hemispheres 18.8
1990 Female, age 91, right hemisphere 18.7
2245 Female, age 91, both hemispheres 18.7
1933 Female, age 85, both hemispheres 18.3
2250 Female, age 67, right hemisphere 18.1
2622 Female, age 67, right hemisphere 16.7
2693 Female, age 94, both hemispheres 15.7
Perirhinal gyrus
nTPM: 20.6
2848 Male, age 76, right hemisphere 21.5
1847 Female, age 91, left hemisphere 21.1
1794 Male, age 80, right hemisphere 20.8
2521 Female, age 94, right hemisphere 20.1
1841 Female, age 85, right hemisphere 19.3
Subiculum
nTPM: 19.1
2042 Male, age 76, both hemispheres 21.4
1901 Male, age 80, both hemispheres 20.6
2729 Female, age 91, right hemisphere 19.7
1977 Female, age 85, both hemispheres 19.4
2619 Male, age 74, both hemispheres 19.3
2438 Female, age 94, left hemisphere 13.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.8
Samples: 197

Max nTPM: 74.3
Min nTPM: 9.7
Std nTPM: 7.8
Median nTPM: 15.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 74.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 68.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 48.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 45.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 40.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 36.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 35.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 32.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 29.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 29.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 26.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.7
FF:10169-103B7 60 years, female 50.2
FF:10153-102I9 76 years, female 49.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 20.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.9
Samples: 4

Max nTPM: 23.0
Min nTPM: 16.7
Sample A Female 23.0
Sample B Female 19.5
Sample C Male 20.3
Sample D Male 16.7
Entorhinal cortex
nTPM: 18.5
Samples: 4

Max nTPM: 20.1
Min nTPM: 16.6
Sample A Female 18.9
Sample B Female 20.1
Sample C Male 18.3
Sample D Male 16.6
Subiculum
nTPM: 18.7
Samples: 4

Max nTPM: 20.8
Min nTPM: 17.1
Sample A Female 20.8
Sample B Female 17.7
Sample C Male 19.0
Sample D Male 17.1
Ventral hippocampus
nTPM: 20.0
Samples: 4

Max nTPM: 23.8
Min nTPM: 16.4
Sample A Female 20.7
Sample B Female 16.4
Sample C Male 23.8
Sample D Male 18.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 34.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.6
Samples: 4

Max nTPM: 33.8
Min nTPM: 29.0
Sample A Male 30.2
Sample B Male 29.0
Sample C Female 33.8
Sample D Female 29.2
Hippocampal formation
nTPM: 34.6
Samples: 4

Max nTPM: 36.0
Min nTPM: 33.8
Sample A Male 33.8
Sample B Male 36.0
Sample C Female 34.4
Sample D Female 34.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.1
70565383 Antisense, RP_050623_04_G11, Mouse strain C57BL/6J (56 days, male) 3.3
74988746 Antisense, RP_060315_05_G01, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.