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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.6 nTPM
HPA:19.6 nTPM
GTEx:15.6 nTPM
FANTOM5:52.1 Scaled Tags Per Million
Pig:22.7 nTPM
Mouse:11.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.2
2019 Male, age 18, unknown 19.6
1827 Male, age 72, unknown 19.5
2411 Female, age 72, unknown 19.4
1870 Female, age 42, unknown 19.0
1830 Male, age 51, unknown 18.1
1833 Male, age 53, unknown 18.1
2219 Male, age 76, both hemispheres 17.6
2828 Female, age 72, unknown 17.2
2586 Male, age 75, left hemisphere 17.0
2666 Male, age 74, left hemisphere 16.7
Dorsal raphe nucleus
nTPM: 19.0
2298 Female, age 72, unknown 20.8
2750 Male, age 76, both hemispheres 19.2
2047 Male, age 72, unknown 18.4
1828 Male, age 53, unknown 18.3
2016 Female, age 72, unknown 18.2
Inferior colliculus
nTPM: 18.7
2097 Female, age 72, unknown 20.7
1848 Female, age 42, unknown 19.0
1890 Male, age 53, unknown 18.2
2849 Male, age 72, unknown 17.0
Median raphe nucleus
nTPM: 18.4
2220 Male, age 76, midline 18.4
Pedunculopontine tegmental nucleus
nTPM: 19.1
2338 Male, age 61, both hemispheres 19.7
1921 Female, age 85, both hemispheres 19.2
2334 Male, age 80, both hemispheres 18.4
Periaquaductal grey, anterior
nTPM: 19.4
1947 Male, age 18, unknown 20.5
2502 Female, age 75, unknown 19.6
1795 Male, age 51, unknown 18.2
Periaquaductal grey, dorsal
nTPM: 18.3
1831 Male, age 72, unknown 18.8
1840 Male, age 53, unknown 18.5
2850 Male, age 76, both hemispheres 18.5
2464 Female, age 72, unknown 17.5
Periaquaductal grey, lateral
nTPM: 18.9
2272 Male, age 74, both hemispheres 21.6
2053 Male, age 18, unknown 18.2
2140 Male, age 76, both hemispheres 16.8
Pretectal area
nTPM: 19.6
2273 Male, age 74, both hemispheres 21.3
1817 Female, age 42, unknown 21.0
2007 Male, age 72, unknown 20.6
1944 Female, age 72, unknown 20.5
1816 Male, age 51, unknown 20.4
2224 Female, age 72, unknown 19.4
1815 Male, age 53, unknown 19.3
2407 Male, age 75, both hemispheres 19.0
2316 Male, age 76, right hemisphere 18.5
2667 Female, age 75, unknown 18.3
2825 Male, age 18, unknown 17.7
Red nucleus
nTPM: 18.3
1821 Female, age 72, unknown 20.7
2725 Female, age 75, unknown 19.5
2785 Male, age 18, unknown 19.3
1865 Male, age 51, unknown 18.8
1904 Male, age 53, unknown 18.7
1954 Female, age 42, unknown 18.6
2823 Male, age 76, right hemisphere 18.0
2227 Male, age 72, unknown 17.6
2769 Male, age 72, unknown 17.6
2503 Female, age 72, unknown 17.5
2588 Male, age 74, left hemisphere 16.5
2584 Male, age 75, left hemisphere 16.4
Substantia nigra
nTPM: 19.0
1889 Female, age 72, unknown 20.4
2241 Male, age 72, unknown 20.2
1916 Female, age 42, unknown 19.9
1851 Male, age 51, unknown 19.6
1941 Male, age 53, unknown 19.4
2590 Female, age 75, unknown 19.0
2583 Male, age 75, right hemisphere 18.8
2409 Female, age 72, unknown 18.2
2665 Male, age 74, both hemispheres 17.3
2699 Male, age 18, unknown 17.0
Superior colliculus
nTPM: 18.6
2261 Male, age 18, unknown 19.6
1796 Male, age 53, unknown 19.3
2087 Female, age 72, unknown 19.3
1839 Male, age 51, unknown 18.7
1895 Male, age 76, right hemisphere 18.7
1913 Female, age 42, unknown 18.4
2587 Male, age 74, left hemisphere 18.4
1995 Male, age 72, unknown 18.3
2668 Female, age 75, unknown 18.3
2664 Male, age 75, both hemispheres 16.7
Ventral tegmental area
nTPM: 18.8
2218 Male, age 76, both hemispheres 19.9
1915 Female, age 42, unknown 19.0
2223 Female, age 72, unknown 18.8
2410 Female, age 72, unknown 18.6
2021 Male, age 53, unknown 18.4
1942 Male, age 51, unknown 17.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.6
Samples: 139

Max nTPM: 29.6
Min nTPM: 10.4
Std nTPM: 2.6
Median nTPM: 15.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 20.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 19.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 19.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 19.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 19.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 19.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 19.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 18.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.1
FF:10158-103A5 76 years, female 52.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.7
Pig sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 25.7
Min nTPM: 19.2
Sample A Female 23.0
Sample B Female 19.2
Sample C Male 25.7
Sample D Male 20.6
Periaqueductal gray
nTPM: 19.8
Samples: 3

Max nTPM: 21.0
Min nTPM: 18.5
Sample B Female 19.8
Sample C Male 21.0
Sample D Male 18.5
Substantia nigra
nTPM: 21.5
Samples: 4

Max nTPM: 24.1
Min nTPM: 19.6
Sample A Female 22.7
Sample B Female 19.7
Sample C Male 24.1
Sample D Male 19.6
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 23.5
Min nTPM: 22.0
Sample A Female 22.8
Sample B Female 22.3
Sample C Male 23.5
Sample D Male 22.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 12.3
Min nTPM: 11.0
Sample A Male 11.6
Sample B Male 12.3
Sample C Female 12.2
Sample D Female 11.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68300851 Antisense, RP_041129_02_C08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.