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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:374.6 nTPM
HPA:374.6 nTPM
GTEx:411.2 nTPM
FANTOM5:1074.2 Scaled Tags Per Million
Pig:584.4 nTPM
Mouse:950.0 nTPM
Allen mouse:12.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 374.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 280.5
2019 Male, age 18, unknown 434.3
2666 Male, age 74, left hemisphere 323.7
1827 Male, age 72, unknown 317.9
2586 Male, age 75, left hemisphere 307.6
1870 Female, age 42, unknown 244.8
2828 Female, age 72, unknown 241.5
1833 Male, age 53, unknown 237.1
1830 Male, age 51, unknown 236.6
2411 Female, age 72, unknown 233.3
2219 Male, age 76, both hemispheres 227.9
Dorsal raphe nucleus
nTPM: 235.9
2298 Female, age 72, unknown 272.1
1828 Male, age 53, unknown 248.6
2047 Male, age 72, unknown 237.1
2016 Female, age 72, unknown 213.1
2750 Male, age 76, both hemispheres 208.8
Inferior colliculus
nTPM: 281.5
2097 Female, age 72, unknown 326.3
1848 Female, age 42, unknown 278.1
2849 Male, age 72, unknown 276.3
1890 Male, age 53, unknown 245.2
Median raphe nucleus
nTPM: 213.9
2220 Male, age 76, midline 213.9
Pedunculopontine tegmental nucleus
nTPM: 263.1
1921 Female, age 85, both hemispheres 272.3
2338 Male, age 61, both hemispheres 258.7
2334 Male, age 80, both hemispheres 258.2
Periaquaductal grey, anterior
nTPM: 283.6
2502 Female, age 75, unknown 322.6
1795 Male, age 51, unknown 281.9
1947 Male, age 18, unknown 246.2
Periaquaductal grey, dorsal
nTPM: 232.3
2850 Male, age 76, both hemispheres 249.1
1840 Male, age 53, unknown 233.5
2464 Female, age 72, unknown 224.9
1831 Male, age 72, unknown 221.7
Periaquaductal grey, lateral
nTPM: 221.4
2053 Male, age 18, unknown 240.4
2272 Male, age 74, both hemispheres 239.2
2140 Male, age 76, both hemispheres 184.5
Pretectal area
nTPM: 374.6
1944 Female, age 72, unknown 580.2
1816 Male, age 51, unknown 569.9
1817 Female, age 42, unknown 552.0
2007 Male, age 72, unknown 526.8
1815 Male, age 53, unknown 441.3
2667 Female, age 75, unknown 265.7
2407 Male, age 75, both hemispheres 263.4
2224 Female, age 72, unknown 259.4
2273 Male, age 74, both hemispheres 250.9
2825 Male, age 18, unknown 222.4
2316 Male, age 76, right hemisphere 188.9
Red nucleus
nTPM: 260.4
2785 Male, age 18, unknown 386.8
1821 Female, age 72, unknown 305.8
2588 Male, age 74, left hemisphere 287.3
2725 Female, age 75, unknown 280.2
2584 Male, age 75, left hemisphere 271.8
2503 Female, age 72, unknown 259.7
1865 Male, age 51, unknown 246.6
1954 Female, age 42, unknown 241.5
2823 Male, age 76, right hemisphere 224.9
2227 Male, age 72, unknown 214.2
1904 Male, age 53, unknown 203.6
2769 Male, age 72, unknown 202.6
Substantia nigra
nTPM: 281.1
1889 Female, age 72, unknown 424.4
1941 Male, age 53, unknown 406.3
2665 Male, age 74, both hemispheres 313.8
2583 Male, age 75, right hemisphere 285.0
2590 Female, age 75, unknown 284.7
1851 Male, age 51, unknown 244.5
1916 Female, age 42, unknown 233.9
2409 Female, age 72, unknown 223.3
2241 Male, age 72, unknown 221.5
2699 Male, age 18, unknown 173.4
Superior colliculus
nTPM: 315.1
2087 Female, age 72, unknown 418.9
1995 Male, age 72, unknown 336.8
2664 Male, age 75, both hemispheres 328.5
2261 Male, age 18, unknown 326.5
2668 Female, age 75, unknown 316.1
1913 Female, age 42, unknown 297.4
1796 Male, age 53, unknown 293.8
1895 Male, age 76, right hemisphere 292.2
2587 Male, age 74, left hemisphere 273.0
1839 Male, age 51, unknown 267.8
Ventral tegmental area
nTPM: 231.7
2223 Female, age 72, unknown 272.1
2410 Female, age 72, unknown 257.9
2218 Male, age 76, both hemispheres 239.5
1942 Male, age 51, unknown 214.5
1915 Female, age 42, unknown 209.1
2021 Male, age 53, unknown 196.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 411.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 411.2
Samples: 139

Max nTPM: 1176.8
Min nTPM: 254.6
Std nTPM: 107.6
Median nTPM: 392.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1176.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 768.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 732.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 636.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 632.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 606.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 596.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 591.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 590.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 566.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 550.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1074.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1074.2
FF:10158-103A5 76 years, female 1074.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 584.4
Pig sample Sample description nTPM
Midbrain
nTPM: 542.8
Samples: 4

Max nTPM: 914.0
Min nTPM: 308.9
Sample A Female 308.9
Sample B Female 378.7
Sample C Male 914.0
Sample D Male 569.7
Periaqueductal gray
nTPM: 387.2
Samples: 3

Max nTPM: 453.9
Min nTPM: 335.5
Sample B Female 372.3
Sample C Male 453.9
Sample D Male 335.5
Substantia nigra
nTPM: 371.2
Samples: 4

Max nTPM: 524.0
Min nTPM: 216.1
Sample A Female 524.0
Sample B Female 332.1
Sample C Male 412.5
Sample D Male 216.1
Superior colliculi
nTPM: 584.5
Samples: 4

Max nTPM: 787.1
Min nTPM: 385.7
Sample A Female 649.4
Sample B Female 385.7
Sample C Male 787.1
Sample D Male 515.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 950.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 950.0
Samples: 4

Max nTPM: 1000.9
Min nTPM: 922.2
Sample A Male 922.2
Sample B Male 932.6
Sample C Female 1000.9
Sample D Female 944.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.7
179 Antisense, RP_Baylor_102652, Mouse strain C57BL/6J (56 days, male) 12.7
180 Antisense, RP_Baylor_102652, Mouse strain C57BL/6J (56 days, male) 8.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.