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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:47.7 nTPM
HPA:47.7 nTPM
GTEx:61.7 nTPM
FANTOM5:72.3 Scaled Tags Per Million
Pig:5.5 nTPM
Mouse:65.1 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA022130Antibody HPA031626
Glial cells Not detectedNot detected
Neuronal cells LowLow



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.6
1857 Female, age 85, left hemisphere 53.0
2481 Female, age 94, left hemisphere 50.2
2290 Female, age 72, unknown 48.6
1854 Male, age 80, left hemisphere 47.8
2846 Female, age 79, unknown 47.1
2288 Male, age 75, left hemisphere 46.0
2289 Male, age 61, right hemisphere 44.2
1781 Male, age 74, unknown 43.9
Claustrum
nTPM: 39.8
2196 Female, age 79, unknown 41.3
2198 Male, age 80, both hemispheres 40.8
1956 Male, age 74, unknown 40.2
2292 Female, age 85, both hemispheres 40.0
2392 Female, age 94, both hemispheres 39.9
2491 Male, age 75, both hemispheres 39.6
2645 Female, age 72, unknown 39.1
2568 Male, age 61, both hemispheres 38.9
2284 Female, age 91, both hemispheres 38.3
Globus pallidus, externus
nTPM: 45.0
1996 Male, age 80, right hemisphere 49.0
2772 Female, age 79, unknown 46.5
2646 Male, age 61, right hemisphere 45.3
2395 Male, age 75, both hemispheres 43.6
2567 Female, age 72, unknown 40.8
Globus pallidus, internus
nTPM: 44.9
2483 Female, age 94, right hemisphere 48.8
2037 Male, age 80, right hemisphere 46.6
1818 Male, age 74, unknown 45.7
2287 Male, age 75, right hemisphere 45.5
2778 Female, age 91, both hemispheres 44.7
2111 Female, age 85, right hemisphere 41.7
2566 Female, age 72, unknown 41.4
Nucleus accumbens
nTPM: 47.7
1806 Female, age 85, left hemisphere 52.4
2698 Female, age 72, unknown 49.5
1856 Female, age 91, right hemisphere 49.3
1783 Male, age 74, unknown 47.6
2824 Male, age 61, right hemisphere 47.6
2286 Male, age 75, left hemisphere 46.9
2391 Female, age 94, left hemisphere 44.8
2732 Male, age 80, right hemisphere 43.5
Nucleus basalis of Meynert
nTPM: 44.6
2569 Male, age 61, both hemispheres 47.9
2393 Male, age 80, right hemisphere 44.5
2484 Female, age 94, left hemisphere 43.7
2821 Male, age 75, both hemispheres 42.1
Nucleus of the diagonal band
nTPM: 41.6
1979 Male, age 74, unknown 43.7
1812 Female, age 91, both hemispheres 43.3
2195 Female, age 85, both hemispheres 41.7
2029 Male, age 61, right hemisphere 39.8
2775 Male, age 80, right hemisphere 39.8
Olfactory tubercle
nTPM: 40.9
2856 Male, age 75, right hemisphere 42.3
1998 Female, age 91, both hemispheres 40.8
1846 Male, age 80, right hemisphere 40.6
2487 Female, age 94, left hemisphere 39.8
Putamen
nTPM: 45.6
1838 Male, age 80, right hemisphere 48.8
2482 Female, age 94, left hemisphere 48.8
1937 Female, age 91, right hemisphere 47.7
2466 Female, age 79, unknown 45.6
1829 Male, age 74, unknown 44.3
2489 Female, age 72, unknown 43.1
2647 Male, age 75, left hemisphere 40.5
Septal nuclei
nTPM: 42.3
2199 Male, age 80, right hemisphere 44.2
2059 Female, age 85, both hemispheres 43.3
2031 Female, age 72, unknown 42.7
2394 Male, age 61, left hemisphere 41.7
2009 Female, age 91, both hemispheres 41.5
2629 Female, age 94, right hemisphere 41.3
1960 Male, age 74, unknown 41.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 61.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 55.4
Samples: 246

Max nTPM: 119.3
Min nTPM: 13.4
Std nTPM: 15.1
Median nTPM: 52.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 119.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 107.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 104.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 100.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 96.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 94.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 93.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 93.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 92.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 89.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 86.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 61.7
Samples: 246

Max nTPM: 177.4
Min nTPM: 30.8
Std nTPM: 18.8
Median nTPM: 57.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 177.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 146.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 140.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 125.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 123.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 115.5
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 106.5
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 106.1
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 100.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 100.5
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 98.5
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Brain - Putamen (basal ganglia)
Average nTPM: 57.8
Samples: 205

Max nTPM: 141.1
Min nTPM: 28.1
Std nTPM: 17.5
Median nTPM: 54.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 141.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 123.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 111.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 108.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 101.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 99.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 98.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 96.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 95.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 92.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 91.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 69.5
FF:10164-103B2 76 years, female 69.5
Globus pallidus
Scaled Tags Per Million: 38.0
FF:10161-103A8 76 years, female 42.0
FF:10175-103C4 60 years, female 33.9
Nucleus accumbens
Scaled Tags Per Million: 53.6
FF:10037-101F1 23-56 years, mixed 53.6
Putamen
Scaled Tags Per Million: 72.3
FF:10176-103C5 60 years, female 72.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.5
Pig sample Sample description nTPM
Caudate
nTPM: 4.2
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 4.8
Sample C Male 4.1
Sample D Male 4.0
Putamen
nTPM: 5.1
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.5
Sample A Female 6.1
Sample B Female 4.6
Sample C Male 4.5
Sample D Male 5.0
Septum
nTPM: 5.5
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.0
Sample A Female 5.0
Sample B Female 5.3
Sample C Male 6.3
Sample D Male 5.5
Ventral pallidum
nTPM: 5.0
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 5.0
Sample C Male 6.4
Sample D Male 4.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 65.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Male 0.6
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.1
Sample A Male 0.3
Sample B Male 0.4
Sample C Female 0.5
Sample D Female 0.1
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
68666625 Antisense, RP_050126_02_F06, Mouse strain C57BL/6J (56 days, male) 0.2
100144173 Antisense, RP_110407_03_D02, Mouse strain C57BL/6J (56 days, male) 0.2
Striatum
Expression energy: 0.2
68666625 Antisense, RP_050126_02_F06, Mouse strain C57BL/6J (56 days, male) 0.2
100144173 Antisense, RP_110407_03_D02, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.3
68666625 Antisense, RP_050126_02_F06, Mouse strain C57BL/6J (56 days, male) 0.3
100144173 Antisense, RP_110407_03_D02, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.3
68666625 Antisense, RP_050126_02_F06, Mouse strain C57BL/6J (56 days, male) 0.3
100144173 Antisense, RP_110407_03_D02, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.