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PLXNB3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:77.4 nTPM
HPA:77.4 nTPM
GTEx:68.2 nTPM
FANTOM5:51.5 Scaled Tags Per Million
Pig:3.9 nTPM
Mouse:4.6 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048046
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 77.4
Sample id Sample description nTPM
Hippocampus
nTPM: 62.9
2529 Female, age 94, left hemisphere 83.7
1911 Female, age 85, right hemisphere 77.8
2148 Female, age 91, left hemisphere 57.3
1898 Male, age 80, left hemisphere 54.0
2621 Female, age 67, right hemisphere 53.7
1855 Male, age 76, left hemisphere 50.8
Dentate gyrus
nTPM: 65.9
2528 Male, age 74, both hemispheres 82.0
2530 Female, age 94, left hemisphere 81.1
2246 Female, age 85, both hemispheres 65.3
2010 Male, age 76, both hemispheres 64.1
2531 Female, age 67, both hemispheres 53.4
1927 Female, age 91, both hemispheres 49.3
Entorhinal gyrus
nTPM: 63.7
2117 Female, age 91, right hemisphere 81.9
2764 Male, age 80, right hemisphere 79.4
2686 Male, age 75, right hemisphere 58.5
2613 Female, age 94, left hemisphere 56.4
1787 Male, age 76, left hemisphere 54.0
1938 Female, age 85, left hemisphere 52.0
Hippocampus, CA1
nTPM: 55.6
2082 Female, age 91, right hemisphere 66.6
2527 Male, age 74, both hemispheres 66.1
1873 Female, age 85, both hemispheres 63.3
2749 Male, age 80, left hemisphere 45.2
2045 Male, age 76, both hemispheres 36.6
Hippocampus, CA2
nTPM: 63.6
2437 Female, age 94, left hemisphere 71.1
2249 Male, age 74, both hemispheres 70.9
2113 Female, age 91, right hemisphere 68.5
1940 Female, age 85, left hemisphere 65.3
1963 Male, age 80, left hemisphere 65.1
1892 Male, age 76, both hemispheres 40.9
Hippocampus, CA3
nTPM: 54.4
1891 Female, age 85, both hemispheres 86.7
2436 Male, age 74, both hemispheres 51.7
2620 Female, age 94, left hemisphere 50.4
1867 Male, age 76, both hemispheres 49.9
2137 Male, age 80, left hemisphere 44.3
2861 Female, age 67, both hemispheres 43.4
Parahippocampal cortex
nTPM: 55.9
2692 Male, age 74, both hemispheres 79.3
1990 Female, age 91, right hemisphere 65.6
2532 Female, age 72, left hemisphere 65.0
2018 Male, age 76, both hemispheres 56.6
2245 Female, age 91, both hemispheres 53.9
1850 Male, age 80, both hemispheres 53.5
1933 Female, age 85, both hemispheres 50.5
2693 Female, age 94, both hemispheres 46.8
2622 Female, age 67, right hemisphere 45.5
2250 Female, age 67, right hemisphere 41.8
Perirhinal gyrus
nTPM: 43.6
1794 Male, age 80, right hemisphere 47.5
2521 Female, age 94, right hemisphere 46.6
2848 Male, age 76, right hemisphere 45.2
1847 Female, age 91, left hemisphere 42.0
1841 Female, age 85, right hemisphere 36.9
Subiculum
nTPM: 77.4
2042 Male, age 76, both hemispheres 96.4
1901 Male, age 80, both hemispheres 79.4
2619 Male, age 74, both hemispheres 79.2
2438 Female, age 94, left hemisphere 73.8
2729 Female, age 91, right hemisphere 68.5
1977 Female, age 85, both hemispheres 67.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 68.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 68.2
Samples: 197

Max nTPM: 281.8
Min nTPM: 5.3
Std nTPM: 41.2
Median nTPM: 59.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 281.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 199.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 185.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 178.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 173.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 171.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 171.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 165.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 158.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 153.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 149.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.5
FF:10153-102I9 76 years, female 81.0
FF:10169-103B7 60 years, female 21.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 3.8
Samples: 4

Max nTPM: 6.2
Min nTPM: 1.4
Sample A Female 6.2
Sample B Female 2.5
Sample C Male 4.9
Sample D Male 1.4
Entorhinal cortex
nTPM: 2.6
Samples: 4

Max nTPM: 4.3
Min nTPM: 1.9
Sample A Female 4.3
Sample B Female 2.0
Sample C Male 2.3
Sample D Male 1.9
Subiculum
nTPM: 3.0
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.5
Sample A Female 3.9
Sample B Female 2.6
Sample C Male 2.5
Sample D Male 2.8
Ventral hippocampus
nTPM: 4.0
Samples: 4

Max nTPM: 5.0
Min nTPM: 2.1
Sample A Female 4.9
Sample B Female 2.1
Sample C Male 5.0
Sample D Male 3.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 4.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.0
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.0
Sample A Male 3.9
Sample B Male 3.2
Sample C Female 2.8
Sample D Female 2.0
Hippocampal formation
nTPM: 4.7
Samples: 4

Max nTPM: 6.0
Min nTPM: 3.1
Sample A Male 3.1
Sample B Male 5.1
Sample C Female 6.0
Sample D Female 4.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
71213755 Antisense, RP_050816_04_E10, Mouse strain C57BL/6J (56 days, male) 0.4
1265 Antisense, RP_Baylor_103343, Mouse strain C57BL/6J (56 days, male) 0.2
1266 Antisense, RP_Baylor_103343, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.