Single cell type - ARHGAP11A - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	ARHGAP11A
Gene descriptionⁱ Full gene name according to HGNC.	Rho GTPase activating protein 11A
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	6

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Non-specific - Cell cycle regulation (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Erythroid cells, Spermatocytes, Extravillous trophoblasts, Spermatogonia, Granulosa cells, Plasma cells)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low immune cell specificity
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in single
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Erythroid cells, Spermatocytes, Extravillous trophoblasts, Spermatogonia, Granulosa cells, Plasma cells)

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

ARHGAP11A is part of cluster 12 Non-specific - Cell cycle regulation with confidenceⁱ 1
294 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
MKI67	Marker of proliferation Ki-67	0.9492	12
CENPA	Centromere protein A	0.9491	12
KIF18B	Kinesin family member 18B	0.9332	12
GTSE1	G2 and S-phase expressed 1	0.9278	12
TPX2	TPX2 microtubule nucleation factor	0.9204	12
PRR11	Proline rich 11	0.9201	12
KIF14	Kinesin family member 14	0.9180	12
CENPE	Centromere protein E	0.9124	12
KIF11	Kinesin family member 11	0.9108	12
MXD3	MAX dimerization protein 3	0.9056	12
KIF4A	Kinesin family member 4A	0.8910	12
HJURP	Holliday junction recognition protein	0.8903	12
FOXM1	Forkhead box M1	0.8898	12
NUSAP1	Nucleolar and spindle associated protein 1	0.8859	12
AURKB	Aurora kinase B	0.8822	12

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	0.7 nTPM
Adipose tissue	0.7 nTPM
Breast	0.7 nTPM

Alveolar cells type 1	0.0 nTPM
Lung	0.0 nTPM

Alveolar cells type 2	2.3 nTPM
Lung	2.3 nTPM

Astrocytes	0.3 nTPM
Brain	0.3 nTPM

B-cells	4.6 nTPM
Liver	28.8 nTPM
Adipose tissue	4.0 nTPM
Colon	3.2 nTPM
Breast	2.6 nTPM
Bone marrow	2.5 nTPM
Spleen	2.1 nTPM
PBMC	1.4 nTPM
Stomach	0.9 nTPM
Lymph node	0.5 nTPM
Kidney	0.0 nTPM

Dendritic cells	2.9 nTPM
Breast	5.1 nTPM
Adipose tissue	3.5 nTPM
PBMC	0.0 nTPM

Endothelial cells	2.0 nTPM
Ovary	7.9 nTPM
Endometrium	5.6 nTPM
Eye	4.1 nTPM
Heart muscle	3.0 nTPM
Placenta	2.2 nTPM
Skin	1.5 nTPM
Testis	1.1 nTPM
Skeletal muscle	0.7 nTPM
Prostate	0.6 nTPM
Breast	0.6 nTPM
Liver	0.0 nTPM
Lung	0.0 nTPM
Pancreas	0.0 nTPM
Esophagus	0.0 nTPM

Fibroblasts	3.5 nTPM
Ovary	26.2 nTPM
Placenta	6.7 nTPM
Skin	1.3 nTPM
Skeletal muscle	1.0 nTPM
Esophagus	1.0 nTPM
Adipose tissue	0.7 nTPM
Breast	0.7 nTPM
Heart muscle	0.5 nTPM
Lung	0.0 nTPM
Prostate	0.0 nTPM
Stomach	0.0 nTPM

Intestinal goblet cells	7.8 nTPM
Colon	10.0 nTPM
Small intestine	10.0 nTPM
Rectum	3.4 nTPM

Macrophages	3.5 nTPM
Pancreas	7.7 nTPM
Bone marrow	5.0 nTPM
Esophagus	4.8 nTPM
Spleen	4.2 nTPM
Endometrium	4.1 nTPM
Lung	3.8 nTPM
Testis	3.5 nTPM
Prostate	3.4 nTPM
Breast	3.2 nTPM
Skeletal muscle	3.0 nTPM
Ovary	3.0 nTPM
Stomach	2.9 nTPM
Kidney	2.3 nTPM
Adipose tissue	2.1 nTPM
PBMC	0.0 nTPM

Paneth cells	2.9 nTPM
Small intestine	7.5 nTPM
Rectum	1.2 nTPM
Colon	0.0 nTPM

Plasma cells	18.6 nTPM
Bone marrow	46.2 nTPM
Spleen	38.0 nTPM
Stomach	5.8 nTPM
Adipose tissue	3.3 nTPM
Esophagus	0.0 nTPM

Respiratory ciliated cells	1.4 nTPM
Lung	1.5 nTPM
Bronchus	1.3 nTPM

Smooth muscle cells	3.3 nTPM
Pancreas	12.5 nTPM
Endometrium	10.4 nTPM
Ovary	7.0 nTPM
Bronchus	2.0 nTPM
Esophagus	1.5 nTPM
Skin	1.4 nTPM
Heart muscle	0.5 nTPM
Breast	0.5 nTPM
Skeletal muscle	0.3 nTPM
Adipose tissue	0.2 nTPM
Prostate	0.0 nTPM

T-cells	5.4 nTPM
Esophagus	19.7 nTPM
Ovary	11.1 nTPM
Liver	8.8 nTPM
Endometrium	7.2 nTPM
Skin	6.9 nTPM
Lymph node	6.0 nTPM
Adipose tissue	5.7 nTPM
Bone marrow	5.2 nTPM
Colon	4.3 nTPM
Breast	3.6 nTPM
Kidney	3.4 nTPM
Skeletal muscle	2.8 nTPM
Stomach	2.7 nTPM
Spleen	2.6 nTPM
PBMC	2.4 nTPM
Lung	0.0 nTPM
Prostate	0.0 nTPM

Collecting duct cells	1.8 nTPM
Kidney	1.8 nTPM

Cytotrophoblasts	9.8 nTPM
Placenta	9.8 nTPM

Distal enterocytes	6.2 nTPM
Colon	12.0 nTPM
Rectum	0.4 nTPM

Early spermatids	4.7 nTPM
Testis	4.7 nTPM

Undifferentiated cells	14.1 nTPM
Small intestine	17.1 nTPM
Colon	15.8 nTPM
Rectum	9.5 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC