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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.9 nTPM
HPA:64.9 nTPM
GTEx:53.9 nTPM
FANTOM5:101.6 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:57.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.1
2586 Male, age 75, left hemisphere 88.2
2828 Female, age 72, unknown 65.6
2411 Female, age 72, unknown 60.0
2019 Male, age 18, unknown 59.6
1830 Male, age 51, unknown 59.5
1833 Male, age 53, unknown 58.8
2666 Male, age 74, left hemisphere 58.0
1870 Female, age 42, unknown 56.9
1827 Male, age 72, unknown 54.4
2219 Male, age 76, both hemispheres 50.0
Dorsal raphe nucleus
nTPM: 54.7
2750 Male, age 76, both hemispheres 58.8
1828 Male, age 53, unknown 57.2
2047 Male, age 72, unknown 56.8
2016 Female, age 72, unknown 51.9
2298 Female, age 72, unknown 48.8
Inferior colliculus
nTPM: 50.4
1848 Female, age 42, unknown 51.9
1890 Male, age 53, unknown 51.7
2849 Male, age 72, unknown 51.5
2097 Female, age 72, unknown 46.6
Median raphe nucleus
nTPM: 51.9
2220 Male, age 76, midline 51.9
Pedunculopontine tegmental nucleus
nTPM: 47.4
2334 Male, age 80, both hemispheres 53.2
1921 Female, age 85, both hemispheres 50.2
2338 Male, age 61, both hemispheres 38.6
Periaquaductal grey, anterior
nTPM: 54.5
1947 Male, age 18, unknown 56.4
1795 Male, age 51, unknown 54.1
2502 Female, age 75, unknown 53.0
Periaquaductal grey, dorsal
nTPM: 48.8
2464 Female, age 72, unknown 53.5
2850 Male, age 76, both hemispheres 50.0
1831 Male, age 72, unknown 47.0
1840 Male, age 53, unknown 44.7
Periaquaductal grey, lateral
nTPM: 48.5
2053 Male, age 18, unknown 50.9
2140 Male, age 76, both hemispheres 49.2
2272 Male, age 74, both hemispheres 45.3
Pretectal area
nTPM: 55.4
2007 Male, age 72, unknown 67.4
1817 Female, age 42, unknown 62.2
1815 Male, age 53, unknown 59.8
2667 Female, age 75, unknown 56.3
2316 Male, age 76, right hemisphere 56.1
1816 Male, age 51, unknown 54.8
2407 Male, age 75, both hemispheres 54.3
1944 Female, age 72, unknown 53.5
2825 Male, age 18, unknown 53.5
2224 Female, age 72, unknown 46.5
2273 Male, age 74, both hemispheres 45.1
Red nucleus
nTPM: 64.9
2588 Male, age 74, left hemisphere 72.6
2823 Male, age 76, right hemisphere 71.8
2769 Male, age 72, unknown 67.2
2503 Female, age 72, unknown 66.7
2227 Male, age 72, unknown 65.9
1865 Male, age 51, unknown 64.9
1904 Male, age 53, unknown 64.1
2785 Male, age 18, unknown 62.8
1954 Female, age 42, unknown 62.6
2584 Male, age 75, left hemisphere 62.6
1821 Female, age 72, unknown 62.2
2725 Female, age 75, unknown 55.5
Substantia nigra
nTPM: 55.8
2583 Male, age 75, right hemisphere 68.1
1851 Male, age 51, unknown 61.2
1889 Female, age 72, unknown 58.2
2665 Male, age 74, both hemispheres 57.0
1916 Female, age 42, unknown 56.9
2699 Male, age 18, unknown 55.6
1941 Male, age 53, unknown 54.4
2590 Female, age 75, unknown 53.8
2241 Male, age 72, unknown 46.3
2409 Female, age 72, unknown 46.3
Superior colliculus
nTPM: 56.2
2668 Female, age 75, unknown 67.4
2664 Male, age 75, both hemispheres 62.0
1796 Male, age 53, unknown 56.4
1995 Male, age 72, unknown 56.4
1913 Female, age 42, unknown 55.5
1839 Male, age 51, unknown 54.4
2261 Male, age 18, unknown 54.3
1895 Male, age 76, right hemisphere 53.7
2087 Female, age 72, unknown 51.9
2587 Male, age 74, left hemisphere 50.1
Ventral tegmental area
nTPM: 53.4
2410 Female, age 72, unknown 56.7
2223 Female, age 72, unknown 54.8
1915 Female, age 42, unknown 53.6
2218 Male, age 76, both hemispheres 52.7
2021 Male, age 53, unknown 51.9
1942 Male, age 51, unknown 50.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.9
Samples: 139

Max nTPM: 129.7
Min nTPM: 18.9
Std nTPM: 19.4
Median nTPM: 49.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 129.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 116.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 100.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 98.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 91.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 90.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 89.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 88.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 88.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 88.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 83.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.6
FF:10158-103A5 76 years, female 101.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.2
Pig sample Sample description nTPM
Midbrain
nTPM: 21.3
Samples: 4

Max nTPM: 30.2
Min nTPM: 17.9
Sample A Female 17.9
Sample B Female 18.8
Sample C Male 30.2
Sample D Male 18.1
Periaqueductal gray
nTPM: 14.3
Samples: 3

Max nTPM: 16.9
Min nTPM: 11.8
Sample B Female 16.9
Sample C Male 11.8
Sample D Male 14.1
Substantia nigra
nTPM: 18.4
Samples: 4

Max nTPM: 24.5
Min nTPM: 14.6
Sample A Female 17.1
Sample B Female 14.6
Sample C Male 17.2
Sample D Male 24.5
Superior colliculi
nTPM: 23.2
Samples: 4

Max nTPM: 31.8
Min nTPM: 15.2
Sample A Female 19.3
Sample B Female 15.2
Sample C Male 31.8
Sample D Male 26.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.6
Samples: 4

Max nTPM: 61.6
Min nTPM: 51.8
Sample A Male 61.4
Sample B Male 51.8
Sample C Female 55.7
Sample D Female 61.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
72283504 Antisense, RP_051019_01_E08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas project is funded
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