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POU3F3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.5 nTPM
HPA:35.5 nTPM
GTEx:31.3 nTPM
FANTOM5:195.4 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:15.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.1
1830 Male, age 51, unknown 34.5
1833 Male, age 53, unknown 34.5
2586 Male, age 75, left hemisphere 34.5
2411 Female, age 72, unknown 31.7
1870 Female, age 42, unknown 31.1
2828 Female, age 72, unknown 29.6
2219 Male, age 76, both hemispheres 28.8
2019 Male, age 18, unknown 23.8
2666 Male, age 74, left hemisphere 21.3
1827 Male, age 72, unknown 20.8
Dorsal raphe nucleus
nTPM: 25.7
2750 Male, age 76, both hemispheres 34.1
2047 Male, age 72, unknown 26.4
2016 Female, age 72, unknown 25.9
1828 Male, age 53, unknown 24.5
2298 Female, age 72, unknown 17.5
Inferior colliculus
nTPM: 28.2
2849 Male, age 72, unknown 30.9
1890 Male, age 53, unknown 28.5
2097 Female, age 72, unknown 27.0
1848 Female, age 42, unknown 26.4
Median raphe nucleus
nTPM: 19.3
2220 Male, age 76, midline 19.3
Pedunculopontine tegmental nucleus
nTPM: 21.9
1921 Female, age 85, both hemispheres 31.1
2334 Male, age 80, both hemispheres 24.2
2338 Male, age 61, both hemispheres 10.6
Periaquaductal grey, anterior
nTPM: 27.1
2502 Female, age 75, unknown 39.1
1947 Male, age 18, unknown 24.3
1795 Male, age 51, unknown 18.0
Periaquaductal grey, dorsal
nTPM: 21.6
2464 Female, age 72, unknown 26.4
2850 Male, age 76, both hemispheres 24.3
1840 Male, age 53, unknown 23.3
1831 Male, age 72, unknown 12.5
Periaquaductal grey, lateral
nTPM: 21.4
2140 Male, age 76, both hemispheres 24.7
2272 Male, age 74, both hemispheres 20.2
2053 Male, age 18, unknown 19.4
Pretectal area
nTPM: 19.2
2316 Male, age 76, right hemisphere 29.0
2825 Male, age 18, unknown 24.9
2667 Female, age 75, unknown 24.3
2407 Male, age 75, both hemispheres 21.6
1815 Male, age 53, unknown 19.2
1817 Female, age 42, unknown 17.0
2224 Female, age 72, unknown 17.0
2273 Male, age 74, both hemispheres 16.9
2007 Male, age 72, unknown 16.5
1816 Male, age 51, unknown 13.3
1944 Female, age 72, unknown 11.5
Red nucleus
nTPM: 35.5
2769 Male, age 72, unknown 47.5
2227 Male, age 72, unknown 46.4
1904 Male, age 53, unknown 41.7
2503 Female, age 72, unknown 37.9
1865 Male, age 51, unknown 36.6
1954 Female, age 42, unknown 36.1
1821 Female, age 72, unknown 36.0
2588 Male, age 74, left hemisphere 35.8
2823 Male, age 76, right hemisphere 32.7
2785 Male, age 18, unknown 31.1
2584 Male, age 75, left hemisphere 24.3
2725 Female, age 75, unknown 19.9
Substantia nigra
nTPM: 18.5
2699 Male, age 18, unknown 26.1
2583 Male, age 75, right hemisphere 23.7
1889 Female, age 72, unknown 20.7
1851 Male, age 51, unknown 20.5
2590 Female, age 75, unknown 18.3
1916 Female, age 42, unknown 17.3
2409 Female, age 72, unknown 16.8
2665 Male, age 74, both hemispheres 14.9
2241 Male, age 72, unknown 14.3
1941 Male, age 53, unknown 12.4
Superior colliculus
nTPM: 25.1
1895 Male, age 76, right hemisphere 33.3
1995 Male, age 72, unknown 32.0
1913 Female, age 42, unknown 30.3
1839 Male, age 51, unknown 28.1
2664 Male, age 75, both hemispheres 26.9
2587 Male, age 74, left hemisphere 22.1
2668 Female, age 75, unknown 22.0
1796 Male, age 53, unknown 21.5
2261 Male, age 18, unknown 21.3
2087 Female, age 72, unknown 13.7
Ventral tegmental area
nTPM: 23.3
2223 Female, age 72, unknown 29.1
1942 Male, age 51, unknown 27.0
2410 Female, age 72, unknown 24.3
2021 Male, age 53, unknown 22.3
2218 Male, age 76, both hemispheres 18.9
1915 Female, age 42, unknown 18.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.3
Samples: 139

Max nTPM: 63.0
Min nTPM: 8.8
Std nTPM: 8.5
Median nTPM: 31.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 63.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 62.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 60.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 52.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 48.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 48.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 47.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 46.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 46.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 45.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 42.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 195.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 195.4
FF:10158-103A5 76 years, female 195.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.9
Pig sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 27.1
Min nTPM: 11.1
Sample A Female 27.1
Sample B Female 14.0
Sample C Male 11.1
Sample D Male 19.5
Periaqueductal gray
nTPM: 16.0
Samples: 3

Max nTPM: 18.8
Min nTPM: 12.9
Sample B Female 18.8
Sample C Male 12.9
Sample D Male 16.2
Substantia nigra
nTPM: 16.8
Samples: 4

Max nTPM: 20.2
Min nTPM: 13.3
Sample A Female 19.7
Sample B Female 13.3
Sample C Male 14.1
Sample D Male 20.2
Superior colliculi
nTPM: 14.4
Samples: 4

Max nTPM: 19.4
Min nTPM: 9.0
Sample A Female 19.4
Sample B Female 9.0
Sample C Male 11.0
Sample D Male 18.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.3
Samples: 4

Max nTPM: 15.6
Min nTPM: 15.0
Sample A Male 15.3
Sample B Male 15.0
Sample C Female 15.6
Sample D Female 15.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71212199 Antisense, RP_050816_03_A03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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