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SMG5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.3 nTPM
HPA:48.3 nTPM
GTEx:38.2 nTPM
FANTOM5:139.9 Scaled Tags Per Million
Pig:39.3 nTPM
Mouse:25.7 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.9
2586 Male, age 75, left hemisphere 58.9
2411 Female, age 72, unknown 48.8
2828 Female, age 72, unknown 48.5
2019 Male, age 18, unknown 47.7
2666 Male, age 74, left hemisphere 47.2
1830 Male, age 51, unknown 46.6
1833 Male, age 53, unknown 46.1
1827 Male, age 72, unknown 45.2
1870 Female, age 42, unknown 44.8
2219 Male, age 76, both hemispheres 44.8
Dorsal raphe nucleus
nTPM: 43.5
2750 Male, age 76, both hemispheres 47.1
2047 Male, age 72, unknown 45.4
1828 Male, age 53, unknown 44.2
2016 Female, age 72, unknown 40.9
2298 Female, age 72, unknown 40.1
Inferior colliculus
nTPM: 42.0
2849 Male, age 72, unknown 43.1
1848 Female, age 42, unknown 42.7
1890 Male, age 53, unknown 42.2
2097 Female, age 72, unknown 40.1
Median raphe nucleus
nTPM: 41.8
2220 Male, age 76, midline 41.8
Pedunculopontine tegmental nucleus
nTPM: 42.9
2334 Male, age 80, both hemispheres 43.5
1921 Female, age 85, both hemispheres 43.0
2338 Male, age 61, both hemispheres 42.2
Periaquaductal grey, anterior
nTPM: 44.7
2502 Female, age 75, unknown 45.9
1947 Male, age 18, unknown 45.1
1795 Male, age 51, unknown 43.1
Periaquaductal grey, dorsal
nTPM: 40.5
2464 Female, age 72, unknown 44.4
1840 Male, age 53, unknown 42.1
1831 Male, age 72, unknown 39.5
2850 Male, age 76, both hemispheres 36.0
Periaquaductal grey, lateral
nTPM: 39.7
2053 Male, age 18, unknown 40.7
2272 Male, age 74, both hemispheres 39.8
2140 Male, age 76, both hemispheres 38.6
Pretectal area
nTPM: 44.2
2407 Male, age 75, both hemispheres 48.0
2007 Male, age 72, unknown 47.8
1817 Female, age 42, unknown 46.7
1815 Male, age 53, unknown 46.5
1816 Male, age 51, unknown 45.4
1944 Female, age 72, unknown 45.2
2667 Female, age 75, unknown 43.3
2825 Male, age 18, unknown 43.0
2316 Male, age 76, right hemisphere 42.3
2224 Female, age 72, unknown 40.0
2273 Male, age 74, both hemispheres 38.4
Red nucleus
nTPM: 47.2
2588 Male, age 74, left hemisphere 50.0
2785 Male, age 18, unknown 48.9
2584 Male, age 75, left hemisphere 48.8
1865 Male, age 51, unknown 48.7
2769 Male, age 72, unknown 48.1
2227 Male, age 72, unknown 48.0
1904 Male, age 53, unknown 47.6
2823 Male, age 76, right hemisphere 46.9
1821 Female, age 72, unknown 45.7
2503 Female, age 72, unknown 45.3
1954 Female, age 42, unknown 44.7
2725 Female, age 75, unknown 43.5
Substantia nigra
nTPM: 48.3
1916 Female, age 42, unknown 54.2
2583 Male, age 75, right hemisphere 51.7
1851 Male, age 51, unknown 51.0
2665 Male, age 74, both hemispheres 49.5
2699 Male, age 18, unknown 47.2
2409 Female, age 72, unknown 46.5
2590 Female, age 75, unknown 46.5
1941 Male, age 53, unknown 46.4
1889 Female, age 72, unknown 45.6
2241 Male, age 72, unknown 44.8
Superior colliculus
nTPM: 45.8
2664 Male, age 75, both hemispheres 51.9
2668 Female, age 75, unknown 51.0
2087 Female, age 72, unknown 47.0
1913 Female, age 42, unknown 46.3
1796 Male, age 53, unknown 45.0
1839 Male, age 51, unknown 44.5
2261 Male, age 18, unknown 44.5
1995 Male, age 72, unknown 43.9
1895 Male, age 76, right hemisphere 43.0
2587 Male, age 74, left hemisphere 41.4
Ventral tegmental area
nTPM: 46.1
2410 Female, age 72, unknown 51.4
2223 Female, age 72, unknown 46.5
1915 Female, age 42, unknown 45.9
1942 Male, age 51, unknown 44.5
2218 Male, age 76, both hemispheres 44.3
2021 Male, age 53, unknown 44.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.2
Samples: 139

Max nTPM: 69.1
Min nTPM: 24.0
Std nTPM: 7.2
Median nTPM: 37.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 69.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 55.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 53.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 53.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 52.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 51.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 51.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 51.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 51.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 51.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 49.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.9
FF:10158-103A5 76 years, female 139.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.3
Pig sample Sample description nTPM
Midbrain
nTPM: 37.7
Samples: 4

Max nTPM: 47.4
Min nTPM: 32.0
Sample A Female 47.4
Sample B Female 34.4
Sample C Male 37.1
Sample D Male 32.0
Periaqueductal gray
nTPM: 32.4
Samples: 3

Max nTPM: 34.9
Min nTPM: 29.6
Sample B Female 32.6
Sample C Male 34.9
Sample D Male 29.6
Substantia nigra
nTPM: 39.3
Samples: 4

Max nTPM: 46.6
Min nTPM: 30.2
Sample A Female 46.1
Sample B Female 30.2
Sample C Male 46.6
Sample D Male 34.4
Superior colliculi
nTPM: 35.0
Samples: 4

Max nTPM: 40.7
Min nTPM: 24.6
Sample A Female 36.7
Sample B Female 24.6
Sample C Male 38.1
Sample D Male 40.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 27.7
Min nTPM: 23.6
Sample A Male 27.7
Sample B Male 26.5
Sample C Female 23.6
Sample D Female 25.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.