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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.8 nTPM
HPA:38.8 nTPM
GTEx:38.9 nTPM
FANTOM5:49.7 Scaled Tags Per Million
Pig:74.0 nTPM
Mouse:185.3 nTPM
Allen mouse:8.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.8
Sample id Sample description nTPM
Hippocampus
nTPM: 33.8
2621 Female, age 67, right hemisphere 45.9
1855 Male, age 76, left hemisphere 43.9
2148 Female, age 91, left hemisphere 41.0
1898 Male, age 80, left hemisphere 33.1
1911 Female, age 85, right hemisphere 22.7
2529 Female, age 94, left hemisphere 16.1
Dentate gyrus
nTPM: 30.7
2531 Female, age 67, both hemispheres 37.8
2530 Female, age 94, left hemisphere 37.4
2010 Male, age 76, both hemispheres 34.5
1927 Female, age 91, both hemispheres 33.7
2528 Male, age 74, both hemispheres 21.6
2246 Female, age 85, both hemispheres 19.5
Entorhinal gyrus
nTPM: 23.7
2613 Female, age 94, left hemisphere 47.3
1938 Female, age 85, left hemisphere 24.0
2764 Male, age 80, right hemisphere 23.5
2686 Male, age 75, right hemisphere 22.2
1787 Male, age 76, left hemisphere 15.8
2117 Female, age 91, right hemisphere 9.6
Hippocampus, CA1
nTPM: 29.2
2749 Male, age 80, left hemisphere 52.9
2527 Male, age 74, both hemispheres 32.9
1873 Female, age 85, both hemispheres 26.2
2082 Female, age 91, right hemisphere 18.2
2045 Male, age 76, both hemispheres 15.7
Hippocampus, CA2
nTPM: 24.3
1963 Male, age 80, left hemisphere 54.9
2113 Female, age 91, right hemisphere 25.0
1892 Male, age 76, both hemispheres 20.4
2249 Male, age 74, both hemispheres 16.4
1940 Female, age 85, left hemisphere 15.2
2437 Female, age 94, left hemisphere 14.1
Hippocampus, CA3
nTPM: 32.4
2861 Female, age 67, both hemispheres 60.5
2137 Male, age 80, left hemisphere 55.1
2620 Female, age 94, left hemisphere 39.8
2436 Male, age 74, both hemispheres 17.9
1891 Female, age 85, both hemispheres 11.8
1867 Male, age 76, both hemispheres 9.5
Parahippocampal cortex
nTPM: 21.2
2622 Female, age 67, right hemisphere 42.3
2245 Female, age 91, both hemispheres 28.9
1850 Male, age 80, both hemispheres 25.9
2692 Male, age 74, both hemispheres 21.1
2693 Female, age 94, both hemispheres 19.3
1933 Female, age 85, both hemispheres 19.2
2250 Female, age 67, right hemisphere 17.7
2532 Female, age 72, left hemisphere 16.9
1990 Female, age 91, right hemisphere 10.7
2018 Male, age 76, both hemispheres 10.2
Perirhinal gyrus
nTPM: 24.6
1847 Female, age 91, left hemisphere 30.2
2521 Female, age 94, right hemisphere 29.5
1794 Male, age 80, right hemisphere 23.1
1841 Female, age 85, right hemisphere 22.1
2848 Male, age 76, right hemisphere 18.2
Subiculum
nTPM: 38.8
2438 Female, age 94, left hemisphere 156.7
2729 Female, age 91, right hemisphere 20.4
1901 Male, age 80, both hemispheres 20.2
2042 Male, age 76, both hemispheres 12.2
1977 Female, age 85, both hemispheres 11.8
2619 Male, age 74, both hemispheres 11.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.9
Samples: 197

Max nTPM: 121.2
Min nTPM: 1.2
Std nTPM: 25.8
Median nTPM: 34.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 121.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 110.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 104.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 99.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 99.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 94.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 91.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 87.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 86.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 85.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 85.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.7
FF:10169-103B7 60 years, female 54.4
FF:10153-102I9 76 years, female 45.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 74.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 67.1
Samples: 4

Max nTPM: 86.3
Min nTPM: 46.7
Sample A Female 86.3
Sample B Female 81.6
Sample C Male 46.7
Sample D Male 53.6
Entorhinal cortex
nTPM: 61.4
Samples: 4

Max nTPM: 78.5
Min nTPM: 51.1
Sample A Female 64.2
Sample B Female 51.7
Sample C Male 78.5
Sample D Male 51.1
Subiculum
nTPM: 57.6
Samples: 4

Max nTPM: 62.7
Min nTPM: 50.2
Sample A Female 61.4
Sample B Female 50.2
Sample C Male 62.7
Sample D Male 56.0
Ventral hippocampus
nTPM: 74.0
Samples: 4

Max nTPM: 112.4
Min nTPM: 51.2
Sample A Female 62.7
Sample B Female 51.2
Sample C Male 69.6
Sample D Male 112.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 185.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 103.3
Samples: 4

Max nTPM: 130.1
Min nTPM: 77.1
Sample A Male 92.7
Sample B Male 77.1
Sample C Female 113.1
Sample D Female 130.1
Hippocampal formation
nTPM: 185.3
Samples: 4

Max nTPM: 210.1
Min nTPM: 146.8
Sample A Male 175.5
Sample B Male 208.9
Sample C Female 210.1
Sample D Female 146.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.0
72340183 Antisense, RP_051101_02_B04, Mouse strain C57BL/6J (56 days, male) 11.8
69444789 Antisense, RP_050414_04_F05, Mouse strain C57BL/6J (56 days, male) 11.6
73808528 Antisense, RP_051212_03_B07, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.