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PFDN6
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.6 nTPM
HPA:24.6 nTPM
GTEx:103.5 nTPM
FANTOM5:30.9 Scaled Tags Per Million
Pig:38.0 nTPM
Mouse:106.3 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
1827 Male, age 72, unknown 24.3
1870 Female, age 42, unknown 24.0
2019 Male, age 18, unknown 23.7
2411 Female, age 72, unknown 23.7
2828 Female, age 72, unknown 23.6
1833 Male, age 53, unknown 23.0
2219 Male, age 76, both hemispheres 22.9
1830 Male, age 51, unknown 22.5
2666 Male, age 74, left hemisphere 22.5
2586 Male, age 75, left hemisphere 22.0
Dorsal raphe nucleus
nTPM: 23.6
2047 Male, age 72, unknown 24.3
2298 Female, age 72, unknown 24.1
2750 Male, age 76, both hemispheres 23.8
1828 Male, age 53, unknown 23.5
2016 Female, age 72, unknown 22.5
Inferior colliculus
nTPM: 23.1
2849 Male, age 72, unknown 23.5
1890 Male, age 53, unknown 23.2
2097 Female, age 72, unknown 23.1
1848 Female, age 42, unknown 22.6
Median raphe nucleus
nTPM: 24.6
2220 Male, age 76, midline 24.6
Pedunculopontine tegmental nucleus
nTPM: 23.9
1921 Female, age 85, both hemispheres 24.1
2334 Male, age 80, both hemispheres 23.9
2338 Male, age 61, both hemispheres 23.5
Periaquaductal grey, anterior
nTPM: 23.9
1947 Male, age 18, unknown 24.4
1795 Male, age 51, unknown 24.0
2502 Female, age 75, unknown 23.3
Periaquaductal grey, dorsal
nTPM: 23.3
2850 Male, age 76, both hemispheres 23.7
2464 Female, age 72, unknown 23.6
1840 Male, age 53, unknown 23.3
1831 Male, age 72, unknown 22.8
Periaquaductal grey, lateral
nTPM: 23.5
2272 Male, age 74, both hemispheres 24.0
2053 Male, age 18, unknown 23.9
2140 Male, age 76, both hemispheres 22.7
Pretectal area
nTPM: 24.1
1816 Male, age 51, unknown 25.3
1944 Female, age 72, unknown 25.2
1817 Female, age 42, unknown 25.1
2007 Male, age 72, unknown 24.6
2407 Male, age 75, both hemispheres 24.3
2667 Female, age 75, unknown 24.1
1815 Male, age 53, unknown 24.0
2224 Female, age 72, unknown 23.3
2273 Male, age 74, both hemispheres 23.3
2825 Male, age 18, unknown 23.2
2316 Male, age 76, right hemisphere 22.6
Red nucleus
nTPM: 23.1
2725 Female, age 75, unknown 24.6
2588 Male, age 74, left hemisphere 23.5
1954 Female, age 42, unknown 23.3
2584 Male, age 75, left hemisphere 23.3
2823 Male, age 76, right hemisphere 23.3
1821 Female, age 72, unknown 23.2
1904 Male, age 53, unknown 23.1
1865 Male, age 51, unknown 22.9
2227 Male, age 72, unknown 22.7
2769 Male, age 72, unknown 22.7
2503 Female, age 72, unknown 22.5
2785 Male, age 18, unknown 22.5
Substantia nigra
nTPM: 23.7
1916 Female, age 42, unknown 25.3
1889 Female, age 72, unknown 24.3
1851 Male, age 51, unknown 24.2
2409 Female, age 72, unknown 24.2
2699 Male, age 18, unknown 23.9
1941 Male, age 53, unknown 23.8
2241 Male, age 72, unknown 23.4
2583 Male, age 75, right hemisphere 22.9
2590 Female, age 75, unknown 22.7
2665 Male, age 74, both hemispheres 22.6
Superior colliculus
nTPM: 23.2
2587 Male, age 74, left hemisphere 24.1
1796 Male, age 53, unknown 23.6
2087 Female, age 72, unknown 23.4
2668 Female, age 75, unknown 23.4
1895 Male, age 76, right hemisphere 23.2
1913 Female, age 42, unknown 23.1
2261 Male, age 18, unknown 23.1
2664 Male, age 75, both hemispheres 22.9
1839 Male, age 51, unknown 22.8
1995 Male, age 72, unknown 22.5
Ventral tegmental area
nTPM: 23.4
2223 Female, age 72, unknown 24.0
1915 Female, age 42, unknown 23.8
2410 Female, age 72, unknown 23.3
1942 Male, age 51, unknown 23.2
2021 Male, age 53, unknown 23.0
2218 Male, age 76, both hemispheres 22.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 103.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.5
Samples: 139

Max nTPM: 181.4
Min nTPM: 47.8
Std nTPM: 26.3
Median nTPM: 98.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 181.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 169.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 169.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 159.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 158.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 157.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 156.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 153.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 150.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 145.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 145.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.9
FF:10158-103A5 76 years, female 30.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.0
Pig sample Sample description nTPM
Midbrain
nTPM: 36.6
Samples: 4

Max nTPM: 43.3
Min nTPM: 30.2
Sample A Female 43.3
Sample B Female 40.8
Sample C Male 32.2
Sample D Male 30.2
Periaqueductal gray
nTPM: 38.0
Samples: 3

Max nTPM: 43.2
Min nTPM: 31.9
Sample B Female 38.9
Sample C Male 43.2
Sample D Male 31.9
Substantia nigra
nTPM: 37.0
Samples: 4

Max nTPM: 49.5
Min nTPM: 25.1
Sample A Female 49.5
Sample B Female 31.0
Sample C Male 42.4
Sample D Male 25.1
Superior colliculi
nTPM: 36.2
Samples: 4

Max nTPM: 47.4
Min nTPM: 25.4
Sample A Female 47.4
Sample B Female 25.4
Sample C Male 36.4
Sample D Male 35.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 106.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 106.3
Samples: 4

Max nTPM: 116.0
Min nTPM: 101.2
Sample A Male 116.0
Sample B Male 106.4
Sample C Female 101.2
Sample D Female 101.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68196924 Antisense, RP_041116_01_E12, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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