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PFDN6
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:24.4 nTPM
HPA:24.4 nTPM
GTEx:115.2 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:34.0 nTPM
Mouse:107.5 nTPM
Allen mouse:2.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043032Antibody HPA048123
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.4
Sample id Sample description nTPM
Hippocampus
nTPM: 24.1
2621 Female, age 67, right hemisphere 25.5
1898 Male, age 80, left hemisphere 24.7
1855 Male, age 76, left hemisphere 24.1
2529 Female, age 94, left hemisphere 23.8
2148 Female, age 91, left hemisphere 23.5
1911 Female, age 85, right hemisphere 23.1
Dentate gyrus
nTPM: 23.6
2530 Female, age 94, left hemisphere 24.9
1927 Female, age 91, both hemispheres 23.6
2010 Male, age 76, both hemispheres 23.6
2531 Female, age 67, both hemispheres 23.4
2246 Female, age 85, both hemispheres 23.2
2528 Male, age 74, both hemispheres 23.0
Entorhinal gyrus
nTPM: 23.7
1787 Male, age 76, left hemisphere 24.1
1938 Female, age 85, left hemisphere 23.9
2764 Male, age 80, right hemisphere 23.9
2613 Female, age 94, left hemisphere 23.8
2686 Male, age 75, right hemisphere 23.7
2117 Female, age 91, right hemisphere 23.1
Hippocampus, CA1
nTPM: 23.9
1873 Female, age 85, both hemispheres 24.7
2045 Male, age 76, both hemispheres 24.5
2749 Male, age 80, left hemisphere 24.4
2527 Male, age 74, both hemispheres 23.2
2082 Female, age 91, right hemisphere 22.9
Hippocampus, CA2
nTPM: 23.9
1892 Male, age 76, both hemispheres 25.3
2249 Male, age 74, both hemispheres 24.5
1940 Female, age 85, left hemisphere 23.5
2437 Female, age 94, left hemisphere 23.5
1963 Male, age 80, left hemisphere 23.4
2113 Female, age 91, right hemisphere 22.9
Hippocampus, CA3
nTPM: 23.5
2137 Male, age 80, left hemisphere 24.2
2620 Female, age 94, left hemisphere 24.1
1867 Male, age 76, both hemispheres 23.3
1891 Female, age 85, both hemispheres 23.3
2436 Male, age 74, both hemispheres 23.3
2861 Female, age 67, both hemispheres 23.0
Parahippocampal cortex
nTPM: 24.0
1933 Female, age 85, both hemispheres 25.0
1850 Male, age 80, both hemispheres 24.7
2250 Female, age 67, right hemisphere 24.2
2018 Male, age 76, both hemispheres 24.1
2245 Female, age 91, both hemispheres 24.1
2532 Female, age 72, left hemisphere 24.1
1990 Female, age 91, right hemisphere 23.8
2693 Female, age 94, both hemispheres 23.5
2622 Female, age 67, right hemisphere 23.4
2692 Male, age 74, both hemispheres 23.2
Perirhinal gyrus
nTPM: 24.4
1841 Female, age 85, right hemisphere 25.2
1847 Female, age 91, left hemisphere 24.9
1794 Male, age 80, right hemisphere 24.6
2848 Male, age 76, right hemisphere 24.0
2521 Female, age 94, right hemisphere 23.6
Subiculum
nTPM: 23.7
1977 Female, age 85, both hemispheres 24.4
2619 Male, age 74, both hemispheres 24.1
1901 Male, age 80, both hemispheres 23.9
2042 Male, age 76, both hemispheres 23.9
2438 Female, age 94, left hemisphere 23.4
2729 Female, age 91, right hemisphere 22.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 115.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 115.2
Samples: 197

Max nTPM: 261.4
Min nTPM: 48.1
Std nTPM: 37.0
Median nTPM: 109.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 261.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 226.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 208.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 205.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 202.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 192.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 192.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 187.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 185.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 184.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 183.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.8
FF:10169-103B7 60 years, female 51.2
FF:10153-102I9 76 years, female 20.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 34.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 34.0
Samples: 4

Max nTPM: 45.2
Min nTPM: 25.1
Sample A Female 45.2
Sample B Female 29.4
Sample C Male 36.1
Sample D Male 25.1
Entorhinal cortex
nTPM: 29.4
Samples: 4

Max nTPM: 35.0
Min nTPM: 25.3
Sample A Female 28.3
Sample B Female 35.0
Sample C Male 29.0
Sample D Male 25.3
Subiculum
nTPM: 32.2
Samples: 4

Max nTPM: 42.2
Min nTPM: 28.5
Sample A Female 42.2
Sample B Female 28.5
Sample C Male 29.3
Sample D Male 28.7
Ventral hippocampus
nTPM: 32.4
Samples: 4

Max nTPM: 36.7
Min nTPM: 24.6
Sample A Female 33.5
Sample B Female 24.6
Sample C Male 34.8
Sample D Male 36.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 107.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 107.5
Samples: 4

Max nTPM: 116.0
Min nTPM: 103.4
Sample A Male 104.2
Sample B Male 116.0
Sample C Female 103.4
Sample D Female 106.5
Hippocampal formation
nTPM: 104.7
Samples: 4

Max nTPM: 117.1
Min nTPM: 95.9
Sample A Male 117.1
Sample B Male 98.8
Sample C Female 95.9
Sample D Female 107.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.9
68196924 Antisense, RP_041116_01_E12, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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