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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:42.7 nTPM
HPA:42.7 nTPM
GTEx:46.1 nTPM
FANTOM5:67.2 Scaled Tags Per Million
Pig:23.9 nTPM
Mouse:11.7 nTPM
Allen mouse:3.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA008701
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.5
2288 Male, age 75, left hemisphere 41.5
1781 Male, age 74, unknown 41.3
1854 Male, age 80, left hemisphere 38.7
1857 Female, age 85, left hemisphere 38.0
2846 Female, age 79, unknown 37.4
2289 Male, age 61, right hemisphere 36.0
2290 Female, age 72, unknown 33.5
2481 Female, age 94, left hemisphere 33.5
Claustrum
nTPM: 36.5
2284 Female, age 91, both hemispheres 40.2
2392 Female, age 94, both hemispheres 38.2
2645 Female, age 72, unknown 37.5
1956 Male, age 74, unknown 37.0
2568 Male, age 61, both hemispheres 36.5
2292 Female, age 85, both hemispheres 36.4
2196 Female, age 79, unknown 35.1
2198 Male, age 80, both hemispheres 34.5
2491 Male, age 75, both hemispheres 33.5
Globus pallidus, externus
nTPM: 42.7
2395 Male, age 75, both hemispheres 49.3
2772 Female, age 79, unknown 47.7
1996 Male, age 80, right hemisphere 39.9
2646 Male, age 61, right hemisphere 39.0
2567 Female, age 72, unknown 37.6
Globus pallidus, internus
nTPM: 38.7
2483 Female, age 94, right hemisphere 49.0
2037 Male, age 80, right hemisphere 39.4
2566 Female, age 72, unknown 38.4
1818 Male, age 74, unknown 37.5
2287 Male, age 75, right hemisphere 36.5
2111 Female, age 85, right hemisphere 36.3
2778 Female, age 91, both hemispheres 33.9
Nucleus accumbens
nTPM: 40.9
2391 Female, age 94, left hemisphere 47.7
1806 Female, age 85, left hemisphere 42.8
1856 Female, age 91, right hemisphere 41.4
1783 Male, age 74, unknown 39.9
2698 Female, age 72, unknown 39.7
2732 Male, age 80, right hemisphere 39.0
2824 Male, age 61, right hemisphere 38.8
2286 Male, age 75, left hemisphere 37.6
Nucleus basalis of Meynert
nTPM: 37.5
2569 Male, age 61, both hemispheres 39.4
2484 Female, age 94, left hemisphere 37.6
2821 Male, age 75, both hemispheres 36.9
2393 Male, age 80, right hemisphere 35.9
Nucleus of the diagonal band
nTPM: 38.6
2029 Male, age 61, right hemisphere 40.5
2775 Male, age 80, right hemisphere 39.0
1979 Male, age 74, unknown 38.8
2195 Female, age 85, both hemispheres 38.7
1812 Female, age 91, both hemispheres 36.2
Olfactory tubercle
nTPM: 40.0
2856 Male, age 75, right hemisphere 42.5
1846 Male, age 80, right hemisphere 40.0
2487 Female, age 94, left hemisphere 38.8
1998 Female, age 91, both hemispheres 38.7
Putamen
nTPM: 40.4
1838 Male, age 80, right hemisphere 44.5
2482 Female, age 94, left hemisphere 43.4
1937 Female, age 91, right hemisphere 42.2
2466 Female, age 79, unknown 41.2
1829 Male, age 74, unknown 38.7
2647 Male, age 75, left hemisphere 38.6
2489 Female, age 72, unknown 34.6
Septal nuclei
nTPM: 39.2
2629 Female, age 94, right hemisphere 44.0
2031 Female, age 72, unknown 41.2
2059 Female, age 85, both hemispheres 40.4
2009 Female, age 91, both hemispheres 39.0
1960 Male, age 74, unknown 38.4
2199 Male, age 80, right hemisphere 36.7
2394 Male, age 61, left hemisphere 34.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 46.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.7
Samples: 246

Max nTPM: 62.6
Min nTPM: 23.9
Std nTPM: 6.0
Median nTPM: 43.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 62.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 61.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 60.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 60.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 55.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 55.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 55.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 55.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 54.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 54.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 54.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 46.1
Samples: 246

Max nTPM: 76.3
Min nTPM: 21.4
Std nTPM: 8.6
Median nTPM: 45.0
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 76.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 74.4
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 73.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 72.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 69.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 66.2
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 66.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 64.8
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 64.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 63.7
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 62.7
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Brain - Putamen (basal ganglia)
Average nTPM: 44.5
Samples: 205

Max nTPM: 61.6
Min nTPM: 27.7
Std nTPM: 6.6
Median nTPM: 44.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 61.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 60.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 59.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 58.3
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 57.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 57.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 57.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 56.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 55.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 55.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 55.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 64.5
FF:10164-103B2 76 years, female 64.5
Globus pallidus
Scaled Tags Per Million: 67.2
FF:10161-103A8 76 years, female 77.6
FF:10175-103C4 60 years, female 56.8
Nucleus accumbens
Scaled Tags Per Million: 63.3
FF:10037-101F1 23-56 years, mixed 63.3
Putamen
Scaled Tags Per Million: 63.7
FF:10176-103C5 60 years, female 63.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.9
Pig sample Sample description nTPM
Caudate
nTPM: 21.6
Samples: 4

Max nTPM: 25.1
Min nTPM: 19.0
Sample A Female 19.0
Sample B Female 23.0
Sample C Male 25.1
Sample D Male 19.4
Putamen
nTPM: 23.9
Samples: 4

Max nTPM: 26.7
Min nTPM: 18.6
Sample A Female 26.4
Sample B Female 18.6
Sample C Male 23.8
Sample D Male 26.7
Septum
nTPM: 21.6
Samples: 4

Max nTPM: 23.6
Min nTPM: 19.7
Sample A Female 23.6
Sample B Female 21.0
Sample C Male 19.7
Sample D Male 22.1
Ventral pallidum
nTPM: 22.1
Samples: 4

Max nTPM: 24.1
Min nTPM: 18.5
Sample A Female 18.5
Sample B Female 22.6
Sample C Male 23.3
Sample D Male 24.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.3
Samples: 4

Max nTPM: 13.3
Min nTPM: 8.3
Sample A Male 10.7
Sample B Male 13.3
Sample C Female 8.3
Sample D Female 8.7
Septum
nTPM: 11.7
Samples: 4

Max nTPM: 12.7
Min nTPM: 9.6
Sample A Male 11.9
Sample B Male 12.7
Sample C Female 12.4
Sample D Female 9.6
Ventral forebrain
nTPM: 10.6
Samples: 4

Max nTPM: 13.0
Min nTPM: 8.5
Sample A Male 13.0
Sample B Male 11.4
Sample C Female 9.3
Sample D Female 8.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.1
69079988 Antisense, RP_050324_01_B03, Mouse strain C57BL/6J (56 days, male) 3.1
Pallidum
Expression energy: 3.4
69079988 Antisense, RP_050324_01_B03, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.