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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:4.3 nTPM
HPA:4.3 nTPM
GTEx:15.6 nTPM
FANTOM5:114.7 Scaled Tags Per Million
Pig:20.2 nTPM
Mouse:47.5 nTPM
Allen mouse:3.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017578
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 4.3
Sample id Sample description nTPM
Hippocampus
nTPM: 4.0
1855 Male, age 76, left hemisphere 4.6
2529 Female, age 94, left hemisphere 4.4
2621 Female, age 67, right hemisphere 4.2
2148 Female, age 91, left hemisphere 3.7
1911 Female, age 85, right hemisphere 3.6
1898 Male, age 80, left hemisphere 3.3
Dentate gyrus
nTPM: 3.7
2528 Male, age 74, both hemispheres 4.3
1927 Female, age 91, both hemispheres 4.2
2010 Male, age 76, both hemispheres 3.8
2246 Female, age 85, both hemispheres 3.7
2530 Female, age 94, left hemisphere 3.2
2531 Female, age 67, both hemispheres 3.1
Entorhinal gyrus
nTPM: 3.7
2117 Female, age 91, right hemisphere 5.3
2764 Male, age 80, right hemisphere 3.7
2686 Male, age 75, right hemisphere 3.6
1787 Male, age 76, left hemisphere 3.3
2613 Female, age 94, left hemisphere 3.3
1938 Female, age 85, left hemisphere 3.2
Hippocampus, CA1
nTPM: 3.3
1873 Female, age 85, both hemispheres 4.2
2749 Male, age 80, left hemisphere 4.0
2082 Female, age 91, right hemisphere 3.1
2527 Male, age 74, both hemispheres 3.0
2045 Male, age 76, both hemispheres 2.4
Hippocampus, CA2
nTPM: 4.3
2249 Male, age 74, both hemispheres 5.2
1963 Male, age 80, left hemisphere 4.9
2113 Female, age 91, right hemisphere 4.7
1892 Male, age 76, both hemispheres 4.2
1940 Female, age 85, left hemisphere 3.6
2437 Female, age 94, left hemisphere 3.2
Hippocampus, CA3
nTPM: 3.9
2137 Male, age 80, left hemisphere 4.5
1867 Male, age 76, both hemispheres 4.3
2436 Male, age 74, both hemispheres 4.1
2620 Female, age 94, left hemisphere 3.8
2861 Female, age 67, both hemispheres 3.4
1891 Female, age 85, both hemispheres 3.2
Parahippocampal cortex
nTPM: 3.7
2692 Male, age 74, both hemispheres 4.7
1990 Female, age 91, right hemisphere 4.5
1850 Male, age 80, both hemispheres 4.1
2693 Female, age 94, both hemispheres 4.1
2622 Female, age 67, right hemisphere 3.8
2018 Male, age 76, both hemispheres 3.6
2245 Female, age 91, both hemispheres 3.5
2532 Female, age 72, left hemisphere 3.4
2250 Female, age 67, right hemisphere 3.1
1933 Female, age 85, both hemispheres 2.3
Perirhinal gyrus
nTPM: 3.6
1841 Female, age 85, right hemisphere 3.9
1847 Female, age 91, left hemisphere 3.9
1794 Male, age 80, right hemisphere 3.8
2521 Female, age 94, right hemisphere 3.6
2848 Male, age 76, right hemisphere 2.9
Subiculum
nTPM: 4.1
2042 Male, age 76, both hemispheres 5.3
1901 Male, age 80, both hemispheres 5.1
2619 Male, age 74, both hemispheres 4.3
2729 Female, age 91, right hemisphere 4.3
1977 Female, age 85, both hemispheres 3.4
2438 Female, age 94, left hemisphere 1.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.6
Samples: 197

Max nTPM: 31.2
Min nTPM: 8.8
Std nTPM: 2.9
Median nTPM: 15.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 31.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 27.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 23.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 22.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 22.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 21.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 21.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 21.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 21.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 20.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 20.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 114.7
FF:10169-103B7 60 years, female 117.1
FF:10153-102I9 76 years, female 112.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 20.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 20.3
Samples: 4

Max nTPM: 27.1
Min nTPM: 15.7
Sample A Female 27.1
Sample B Female 20.6
Sample C Male 17.7
Sample D Male 15.7
Entorhinal cortex
nTPM: 16.6
Samples: 4

Max nTPM: 18.0
Min nTPM: 14.1
Sample A Female 17.3
Sample B Female 18.0
Sample C Male 16.9
Sample D Male 14.1
Subiculum
nTPM: 15.7
Samples: 4

Max nTPM: 20.4
Min nTPM: 13.6
Sample A Female 20.4
Sample B Female 14.6
Sample C Male 14.1
Sample D Male 13.6
Ventral hippocampus
nTPM: 18.6
Samples: 4

Max nTPM: 23.7
Min nTPM: 13.0
Sample A Female 18.1
Sample B Female 13.0
Sample C Male 19.7
Sample D Male 23.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 47.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 47.6
Samples: 4

Max nTPM: 54.5
Min nTPM: 43.5
Sample A Male 47.4
Sample B Male 44.8
Sample C Female 43.5
Sample D Female 54.5
Hippocampal formation
nTPM: 47.2
Samples: 4

Max nTPM: 51.5
Min nTPM: 42.6
Sample A Male 42.6
Sample B Male 49.2
Sample C Female 51.5
Sample D Female 45.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.6
69514618 Antisense, RP_050419_03_G02, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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