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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:485.3 nTPM
HPA:485.3 nTPM
GTEx:296.5 nTPM
FANTOM5:659.6 Scaled Tags Per Million
Pig:162.3 nTPM
Mouse:209.5 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 485.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 473.8
2666 Male, age 74, left hemisphere 491.8
2586 Male, age 75, left hemisphere 487.3
1870 Female, age 42, unknown 475.5
2828 Female, age 72, unknown 475.4
1833 Male, age 53, unknown 469.7
2411 Female, age 72, unknown 469.6
1830 Male, age 51, unknown 469.2
2219 Male, age 76, both hemispheres 468.2
1827 Male, age 72, unknown 465.8
2019 Male, age 18, unknown 465.4
Dorsal raphe nucleus
nTPM: 466.6
2750 Male, age 76, both hemispheres 470.9
2298 Female, age 72, unknown 467.2
2016 Female, age 72, unknown 466.9
2047 Male, age 72, unknown 464.3
1828 Male, age 53, unknown 463.5
Inferior colliculus
nTPM: 466.3
1890 Male, age 53, unknown 475.3
1848 Female, age 42, unknown 469.3
2097 Female, age 72, unknown 460.5
2849 Male, age 72, unknown 460.0
Median raphe nucleus
nTPM: 475.4
2220 Male, age 76, midline 475.4
Pedunculopontine tegmental nucleus
nTPM: 481.8
2338 Male, age 61, both hemispheres 506.6
2334 Male, age 80, both hemispheres 486.4
1921 Female, age 85, both hemispheres 452.3
Periaquaductal grey, anterior
nTPM: 473.5
2502 Female, age 75, unknown 483.5
1947 Male, age 18, unknown 471.4
1795 Male, age 51, unknown 465.7
Periaquaductal grey, dorsal
nTPM: 456.8
1831 Male, age 72, unknown 465.0
1840 Male, age 53, unknown 461.0
2464 Female, age 72, unknown 455.9
2850 Male, age 76, both hemispheres 445.4
Periaquaductal grey, lateral
nTPM: 468.0
2272 Male, age 74, both hemispheres 484.8
2053 Male, age 18, unknown 471.7
2140 Male, age 76, both hemispheres 447.6
Pretectal area
nTPM: 462.6
2273 Male, age 74, both hemispheres 469.0
2407 Male, age 75, both hemispheres 465.8
1815 Male, age 53, unknown 465.7
2224 Female, age 72, unknown 465.6
1944 Female, age 72, unknown 463.8
1817 Female, age 42, unknown 463.1
2316 Male, age 76, right hemisphere 462.6
2825 Male, age 18, unknown 462.6
2007 Male, age 72, unknown 460.3
1816 Male, age 51, unknown 459.0
2667 Female, age 75, unknown 450.6
Red nucleus
nTPM: 474.7
2503 Female, age 72, unknown 501.2
1865 Male, age 51, unknown 487.3
1904 Male, age 53, unknown 483.8
2584 Male, age 75, left hemisphere 477.9
2769 Male, age 72, unknown 477.1
2785 Male, age 18, unknown 475.2
1821 Female, age 72, unknown 474.7
2227 Male, age 72, unknown 472.2
1954 Female, age 42, unknown 468.5
2823 Male, age 76, right hemisphere 462.3
2725 Female, age 75, unknown 459.7
2588 Male, age 74, left hemisphere 456.3
Substantia nigra
nTPM: 485.3
2699 Male, age 18, unknown 501.2
2665 Male, age 74, both hemispheres 500.1
1851 Male, age 51, unknown 498.0
1916 Female, age 42, unknown 490.7
2590 Female, age 75, unknown 488.1
2409 Female, age 72, unknown 486.7
2241 Male, age 72, unknown 476.7
1889 Female, age 72, unknown 475.6
2583 Male, age 75, right hemisphere 471.3
1941 Male, age 53, unknown 465.1
Superior colliculus
nTPM: 473.9
1995 Male, age 72, unknown 490.7
2668 Female, age 75, unknown 490.5
2587 Male, age 74, left hemisphere 485.5
1913 Female, age 42, unknown 485.1
2664 Male, age 75, both hemispheres 475.6
1796 Male, age 53, unknown 471.5
1839 Male, age 51, unknown 469.5
2261 Male, age 18, unknown 463.5
2087 Female, age 72, unknown 458.4
1895 Male, age 76, right hemisphere 448.4
Ventral tegmental area
nTPM: 481.0
1915 Female, age 42, unknown 486.2
2410 Female, age 72, unknown 485.1
2021 Male, age 53, unknown 482.0
2223 Female, age 72, unknown 479.6
2218 Male, age 76, both hemispheres 476.7
1942 Male, age 51, unknown 476.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 296.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 296.5
Samples: 139

Max nTPM: 664.5
Min nTPM: 145.2
Std nTPM: 82.2
Median nTPM: 278.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 664.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 567.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 522.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 505.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 501.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 473.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 463.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 447.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 442.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 434.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 418.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 659.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 659.6
FF:10158-103A5 76 years, female 659.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 162.3
Pig sample Sample description nTPM
Midbrain
nTPM: 144.8
Samples: 4

Max nTPM: 200.3
Min nTPM: 111.3
Sample A Female 200.3
Sample B Female 142.4
Sample C Male 125.2
Sample D Male 111.3
Periaqueductal gray
nTPM: 124.3
Samples: 3

Max nTPM: 137.2
Min nTPM: 110.5
Sample B Female 125.3
Sample C Male 137.2
Sample D Male 110.5
Substantia nigra
nTPM: 151.4
Samples: 4

Max nTPM: 188.2
Min nTPM: 121.3
Sample A Female 188.2
Sample B Female 160.5
Sample C Male 135.4
Sample D Male 121.3
Superior colliculi
nTPM: 162.3
Samples: 4

Max nTPM: 199.8
Min nTPM: 132.3
Sample A Female 180.7
Sample B Female 199.8
Sample C Male 132.3
Sample D Male 136.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 209.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 209.5
Samples: 4

Max nTPM: 234.3
Min nTPM: 186.0
Sample A Male 234.3
Sample B Male 197.4
Sample C Female 186.0
Sample D Female 220.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
71021172 Antisense, RP_050531_01_G07, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.