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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:103.8 nTPM
HPA:103.8 nTPM
GTEx:70.4 nTPM
FANTOM5:51.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 103.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.1
2828 Female, age 72, unknown 88.0
2019 Male, age 18, unknown 87.9
2411 Female, age 72, unknown 86.0
1870 Female, age 42, unknown 85.6
1827 Male, age 72, unknown 85.1
1833 Male, age 53, unknown 85.0
1830 Male, age 51, unknown 83.9
2219 Male, age 76, both hemispheres 81.7
2586 Male, age 75, left hemisphere 79.3
2666 Male, age 74, left hemisphere 77.9
Dorsal raphe nucleus
nTPM: 93.2
2298 Female, age 72, unknown 111.4
2016 Female, age 72, unknown 91.6
1828 Male, age 53, unknown 90.2
2750 Male, age 76, both hemispheres 87.5
2047 Male, age 72, unknown 85.1
Inferior colliculus
nTPM: 83.3
2097 Female, age 72, unknown 86.4
2849 Male, age 72, unknown 84.8
1890 Male, age 53, unknown 81.3
1848 Female, age 42, unknown 80.8
Median raphe nucleus
nTPM: 89.1
2220 Male, age 76, midline 89.1
Pedunculopontine tegmental nucleus
nTPM: 86.6
2334 Male, age 80, both hemispheres 88.9
2338 Male, age 61, both hemispheres 88.1
1921 Female, age 85, both hemispheres 82.8
Periaquaductal grey, anterior
nTPM: 88.4
1795 Male, age 51, unknown 92.2
2502 Female, age 75, unknown 87.5
1947 Male, age 18, unknown 85.7
Periaquaductal grey, dorsal
nTPM: 93.3
2850 Male, age 76, both hemispheres 112.1
1840 Male, age 53, unknown 90.1
1831 Male, age 72, unknown 86.3
2464 Female, age 72, unknown 84.6
Periaquaductal grey, lateral
nTPM: 103.8
2272 Male, age 74, both hemispheres 122.9
2140 Male, age 76, both hemispheres 102.6
2053 Male, age 18, unknown 85.9
Pretectal area
nTPM: 91.0
2273 Male, age 74, both hemispheres 124.5
2224 Female, age 72, unknown 97.9
2667 Female, age 75, unknown 90.5
1817 Female, age 42, unknown 89.1
2825 Male, age 18, unknown 88.9
1815 Male, age 53, unknown 87.0
1816 Male, age 51, unknown 85.5
2007 Male, age 72, unknown 85.2
2407 Male, age 75, both hemispheres 85.1
1944 Female, age 72, unknown 84.3
2316 Male, age 76, right hemisphere 83.1
Red nucleus
nTPM: 85.8
1904 Male, age 53, unknown 90.2
2725 Female, age 75, unknown 89.7
2769 Male, age 72, unknown 88.5
1821 Female, age 72, unknown 88.0
2227 Male, age 72, unknown 87.7
1865 Male, age 51, unknown 87.5
2785 Male, age 18, unknown 86.8
2823 Male, age 76, right hemisphere 86.8
1954 Female, age 42, unknown 86.0
2503 Female, age 72, unknown 84.4
2588 Male, age 74, left hemisphere 78.1
2584 Male, age 75, left hemisphere 75.8
Substantia nigra
nTPM: 85.9
1916 Female, age 42, unknown 92.2
2699 Male, age 18, unknown 91.8
1851 Male, age 51, unknown 90.2
2241 Male, age 72, unknown 87.9
1941 Male, age 53, unknown 87.8
1889 Female, age 72, unknown 86.3
2409 Female, age 72, unknown 84.4
2590 Female, age 75, unknown 80.3
2583 Male, age 75, right hemisphere 79.7
2665 Male, age 74, both hemispheres 78.2
Superior colliculus
nTPM: 86.8
2587 Male, age 74, left hemisphere 94.0
1995 Male, age 72, unknown 91.4
2261 Male, age 18, unknown 90.3
2668 Female, age 75, unknown 88.3
1796 Male, age 53, unknown 87.5
1913 Female, age 42, unknown 84.2
1839 Male, age 51, unknown 83.6
2087 Female, age 72, unknown 83.4
2664 Male, age 75, both hemispheres 82.8
1895 Male, age 76, right hemisphere 82.5
Ventral tegmental area
nTPM: 88.5
1915 Female, age 42, unknown 91.6
2218 Male, age 76, both hemispheres 90.8
2223 Female, age 72, unknown 89.0
2410 Female, age 72, unknown 87.7
2021 Male, age 53, unknown 86.5
1942 Male, age 51, unknown 85.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.4
Samples: 139

Max nTPM: 144.2
Min nTPM: 38.4
Std nTPM: 18.8
Median nTPM: 66.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 144.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 143.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 127.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 125.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 118.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 117.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 113.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 110.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 101.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 100.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 100.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.0
FF:10158-103A5 76 years, female 51.0

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