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LCMT1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:45.1 nTPM
HPA:45.1 nTPM
GTEx:36.1 nTPM
FANTOM5:35.9 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:96.7 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041559Antibody HPA043530
Glial cells Not detectedNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 45.1
Sample id Sample description nTPM
Hippocampus
nTPM: 38.6
1898 Male, age 80, left hemisphere 39.8
2529 Female, age 94, left hemisphere 39.1
2148 Female, age 91, left hemisphere 38.9
1855 Male, age 76, left hemisphere 38.7
2621 Female, age 67, right hemisphere 37.7
1911 Female, age 85, right hemisphere 37.4
Dentate gyrus
nTPM: 39.3
1927 Female, age 91, both hemispheres 41.1
2528 Male, age 74, both hemispheres 40.5
2531 Female, age 67, both hemispheres 39.2
2530 Female, age 94, left hemisphere 38.6
2246 Female, age 85, both hemispheres 38.3
2010 Male, age 76, both hemispheres 37.8
Entorhinal gyrus
nTPM: 40.5
2764 Male, age 80, right hemisphere 43.0
2613 Female, age 94, left hemisphere 42.6
1787 Male, age 76, left hemisphere 41.7
1938 Female, age 85, left hemisphere 41.1
2686 Male, age 75, right hemisphere 38.2
2117 Female, age 91, right hemisphere 36.3
Hippocampus, CA1
nTPM: 40.0
2749 Male, age 80, left hemisphere 45.3
1873 Female, age 85, both hemispheres 40.2
2082 Female, age 91, right hemisphere 39.1
2527 Male, age 74, both hemispheres 38.9
2045 Male, age 76, both hemispheres 36.3
Hippocampus, CA2
nTPM: 40.0
1892 Male, age 76, both hemispheres 41.8
1940 Female, age 85, left hemisphere 41.3
1963 Male, age 80, left hemisphere 40.0
2249 Male, age 74, both hemispheres 39.7
2437 Female, age 94, left hemisphere 38.8
2113 Female, age 91, right hemisphere 38.3
Hippocampus, CA3
nTPM: 40.3
2137 Male, age 80, left hemisphere 45.1
2620 Female, age 94, left hemisphere 42.2
1867 Male, age 76, both hemispheres 40.8
2436 Male, age 74, both hemispheres 39.2
1891 Female, age 85, both hemispheres 38.1
2861 Female, age 67, both hemispheres 36.4
Parahippocampal cortex
nTPM: 40.6
1850 Male, age 80, both hemispheres 45.4
1933 Female, age 85, both hemispheres 43.2
1990 Female, age 91, right hemisphere 41.6
2532 Female, age 72, left hemisphere 41.6
2692 Male, age 74, both hemispheres 39.9
2693 Female, age 94, both hemispheres 39.4
2018 Male, age 76, both hemispheres 38.9
2245 Female, age 91, both hemispheres 38.9
2622 Female, age 67, right hemisphere 38.8
2250 Female, age 67, right hemisphere 38.7
Perirhinal gyrus
nTPM: 45.1
1847 Female, age 91, left hemisphere 49.0
1841 Female, age 85, right hemisphere 46.8
1794 Male, age 80, right hemisphere 46.6
2521 Female, age 94, right hemisphere 41.6
2848 Male, age 76, right hemisphere 41.5
Subiculum
nTPM: 38.4
1977 Female, age 85, both hemispheres 41.6
1901 Male, age 80, both hemispheres 40.7
2619 Male, age 74, both hemispheres 37.7
2042 Male, age 76, both hemispheres 37.4
2729 Female, age 91, right hemisphere 36.9
2438 Female, age 94, left hemisphere 35.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 36.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.1
Samples: 197

Max nTPM: 85.5
Min nTPM: 19.3
Std nTPM: 10.7
Median nTPM: 34.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 85.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 68.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 65.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 63.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 63.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 60.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 60.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 57.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 55.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 55.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 54.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.9
FF:10169-103B7 60 years, female 40.8
FF:10153-102I9 76 years, female 31.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 31.1
Samples: 4

Max nTPM: 36.9
Min nTPM: 26.4
Sample A Female 36.9
Sample B Female 34.4
Sample C Male 26.4
Sample D Male 26.5
Entorhinal cortex
nTPM: 23.7
Samples: 4

Max nTPM: 27.8
Min nTPM: 20.1
Sample A Female 25.0
Sample B Female 27.8
Sample C Male 21.8
Sample D Male 20.1
Subiculum
nTPM: 26.3
Samples: 4

Max nTPM: 30.4
Min nTPM: 22.9
Sample A Female 30.4
Sample B Female 28.4
Sample C Male 22.9
Sample D Male 23.6
Ventral hippocampus
nTPM: 27.6
Samples: 4

Max nTPM: 31.7
Min nTPM: 22.0
Sample A Female 27.2
Sample B Female 22.0
Sample C Male 29.5
Sample D Male 31.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 96.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 90.1
Samples: 4

Max nTPM: 94.2
Min nTPM: 83.3
Sample A Male 83.3
Sample B Male 89.2
Sample C Female 93.7
Sample D Female 94.2
Hippocampal formation
nTPM: 96.7
Samples: 4

Max nTPM: 104.3
Min nTPM: 91.4
Sample A Male 104.3
Sample B Male 91.4
Sample C Female 99.2
Sample D Female 92.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
68077015 Antisense, RP_040929_01_C08, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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