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SLC48A1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:127.0 nTPM
HPA:127.0 nTPM
GTEx:96.7 nTPM
FANTOM5:246.6 Scaled Tags Per Million
Pig:60.8 nTPM
Mouse:124.4 nTPM
Allen mouse:9.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 127.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 112.7
2586 Male, age 75, left hemisphere 126.2
1833 Male, age 53, unknown 125.3
1830 Male, age 51, unknown 120.3
2019 Male, age 18, unknown 118.8
1870 Female, age 42, unknown 116.2
2828 Female, age 72, unknown 115.7
2411 Female, age 72, unknown 115.1
2666 Male, age 74, left hemisphere 102.8
1827 Male, age 72, unknown 94.6
2219 Male, age 76, both hemispheres 92.0
Dorsal raphe nucleus
nTPM: 91.9
2750 Male, age 76, both hemispheres 113.0
1828 Male, age 53, unknown 95.4
2016 Female, age 72, unknown 91.5
2047 Male, age 72, unknown 83.4
2298 Female, age 72, unknown 76.0
Inferior colliculus
nTPM: 92.9
2849 Male, age 72, unknown 98.6
1848 Female, age 42, unknown 95.9
1890 Male, age 53, unknown 93.0
2097 Female, age 72, unknown 84.0
Median raphe nucleus
nTPM: 88.4
2220 Male, age 76, midline 88.4
Pedunculopontine tegmental nucleus
nTPM: 95.9
2334 Male, age 80, both hemispheres 100.9
2338 Male, age 61, both hemispheres 94.4
1921 Female, age 85, both hemispheres 92.4
Periaquaductal grey, anterior
nTPM: 87.9
2502 Female, age 75, unknown 91.1
1947 Male, age 18, unknown 90.6
1795 Male, age 51, unknown 81.9
Periaquaductal grey, dorsal
nTPM: 85.1
2464 Female, age 72, unknown 96.2
1831 Male, age 72, unknown 86.2
2850 Male, age 76, both hemispheres 83.5
1840 Male, age 53, unknown 74.7
Periaquaductal grey, lateral
nTPM: 84.5
2053 Male, age 18, unknown 87.7
2140 Male, age 76, both hemispheres 84.1
2272 Male, age 74, both hemispheres 81.7
Pretectal area
nTPM: 94.6
1815 Male, age 53, unknown 109.8
1817 Female, age 42, unknown 106.5
2407 Male, age 75, both hemispheres 105.4
2667 Female, age 75, unknown 102.2
2316 Male, age 76, right hemisphere 97.9
2007 Male, age 72, unknown 96.7
2825 Male, age 18, unknown 94.3
1816 Male, age 51, unknown 85.3
1944 Female, age 72, unknown 85.1
2273 Male, age 74, both hemispheres 79.5
2224 Female, age 72, unknown 78.3
Red nucleus
nTPM: 127.0
1865 Male, age 51, unknown 138.9
1904 Male, age 53, unknown 137.3
2823 Male, age 76, right hemisphere 134.9
1821 Female, age 72, unknown 134.8
2769 Male, age 72, unknown 132.4
2227 Male, age 72, unknown 130.2
2785 Male, age 18, unknown 128.0
1954 Female, age 42, unknown 126.5
2588 Male, age 74, left hemisphere 124.9
2503 Female, age 72, unknown 119.9
2584 Male, age 75, left hemisphere 112.9
2725 Female, age 75, unknown 103.3
Substantia nigra
nTPM: 97.3
2583 Male, age 75, right hemisphere 111.4
1851 Male, age 51, unknown 103.7
2409 Female, age 72, unknown 100.9
1889 Female, age 72, unknown 99.8
2590 Female, age 75, unknown 97.1
2699 Male, age 18, unknown 97.1
2665 Male, age 74, both hemispheres 93.6
1916 Female, age 42, unknown 90.8
1941 Male, age 53, unknown 90.1
2241 Male, age 72, unknown 88.7
Superior colliculus
nTPM: 104.4
1995 Male, age 72, unknown 122.7
1913 Female, age 42, unknown 121.4
2668 Female, age 75, unknown 109.2
1839 Male, age 51, unknown 107.1
2664 Male, age 75, both hemispheres 106.7
1895 Male, age 76, right hemisphere 104.9
2587 Male, age 74, left hemisphere 99.5
1796 Male, age 53, unknown 93.2
2087 Female, age 72, unknown 90.0
2261 Male, age 18, unknown 88.9
Ventral tegmental area
nTPM: 98.8
2223 Female, age 72, unknown 112.0
2410 Female, age 72, unknown 109.4
2218 Male, age 76, both hemispheres 94.4
1915 Female, age 42, unknown 93.1
2021 Male, age 53, unknown 92.3
1942 Male, age 51, unknown 91.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 96.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 96.7
Samples: 139

Max nTPM: 232.4
Min nTPM: 50.2
Std nTPM: 32.3
Median nTPM: 91.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 232.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 216.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 208.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 187.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 182.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 173.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 168.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 160.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 149.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 146.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 140.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 246.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 246.6
FF:10158-103A5 76 years, female 246.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.8
Pig sample Sample description nTPM
Midbrain
nTPM: 60.8
Samples: 4

Max nTPM: 91.9
Min nTPM: 42.6
Sample A Female 91.9
Sample B Female 58.6
Sample C Male 50.1
Sample D Male 42.6
Periaqueductal gray
nTPM: 43.4
Samples: 3

Max nTPM: 51.8
Min nTPM: 38.5
Sample B Female 51.8
Sample C Male 39.9
Sample D Male 38.5
Substantia nigra
nTPM: 60.1
Samples: 4

Max nTPM: 74.8
Min nTPM: 41.9
Sample A Female 66.8
Sample B Female 41.9
Sample C Male 56.8
Sample D Male 74.8
Superior colliculi
nTPM: 52.9
Samples: 4

Max nTPM: 61.0
Min nTPM: 31.2
Sample A Female 61.0
Sample B Female 31.2
Sample C Male 58.8
Sample D Male 60.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 124.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.4
Samples: 4

Max nTPM: 133.5
Min nTPM: 118.6
Sample A Male 119.5
Sample B Male 118.6
Sample C Female 133.5
Sample D Female 126.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
532687 Antisense, RP_040825_01_D10, Mouse strain C57BL/6J (56 days, male) 9.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.