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IGHV3-7
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.0 nTPM
HPA:1.0 nTPM
GTEx:0.1 nTPM
FANTOM5:0.5 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
2846 Female, age 79, unknown 0.4
1857 Female, age 85, left hemisphere 0.2
1781 Male, age 74, unknown 0.1
1854 Male, age 80, left hemisphere 0.1
2288 Male, age 75, left hemisphere 0.1
2289 Male, age 61, right hemisphere 0.1
2290 Female, age 72, unknown 0.1
2481 Female, age 94, left hemisphere 0.1
Claustrum
nTPM: 0.3
2292 Female, age 85, both hemispheres 0.9
2196 Female, age 79, unknown 0.6
2645 Female, age 72, unknown 0.6
2568 Male, age 61, both hemispheres 0.2
1956 Male, age 74, unknown 0.1
2198 Male, age 80, both hemispheres 0.1
2284 Female, age 91, both hemispheres 0.1
2392 Female, age 94, both hemispheres 0.1
2491 Male, age 75, both hemispheres 0.1
Globus pallidus, externus
nTPM: 1.0
2395 Male, age 75, both hemispheres 3.7
2567 Female, age 72, unknown 0.5
2772 Female, age 79, unknown 0.4
1996 Male, age 80, right hemisphere 0.1
2646 Male, age 61, right hemisphere 0.1
Globus pallidus, internus
nTPM: 0.3
2566 Female, age 72, unknown 1.4
2111 Female, age 85, right hemisphere 0.2
1818 Male, age 74, unknown 0.1
2037 Male, age 80, right hemisphere 0.1
2287 Male, age 75, right hemisphere 0.1
2483 Female, age 94, right hemisphere 0.1
2778 Female, age 91, both hemispheres 0.1
Nucleus accumbens
nTPM: 0.2
1806 Female, age 85, left hemisphere 0.2
1856 Female, age 91, right hemisphere 0.2
2732 Male, age 80, right hemisphere 0.2
2824 Male, age 61, right hemisphere 0.2
1783 Male, age 74, unknown 0.1
2286 Male, age 75, left hemisphere 0.1
2391 Female, age 94, left hemisphere 0.1
2698 Female, age 72, unknown 0.1
Nucleus basalis of Meynert
nTPM: 0.1
2393 Male, age 80, right hemisphere 0.1
2484 Female, age 94, left hemisphere 0.1
2569 Male, age 61, both hemispheres 0.1
2821 Male, age 75, both hemispheres 0.1
Nucleus of the diagonal band
nTPM: 0.1
1812 Female, age 91, both hemispheres 0.1
1979 Male, age 74, unknown 0.1
2029 Male, age 61, right hemisphere 0.1
2195 Female, age 85, both hemispheres 0.1
2775 Male, age 80, right hemisphere 0.1
Olfactory tubercle
nTPM: 0.3
1846 Male, age 80, right hemisphere 0.9
1998 Female, age 91, both hemispheres 0.1
2487 Female, age 94, left hemisphere 0.1
2856 Male, age 75, right hemisphere 0.1
Putamen
nTPM: 0.2
2466 Female, age 79, unknown 0.4
1829 Male, age 74, unknown 0.1
1838 Male, age 80, right hemisphere 0.1
1937 Female, age 91, right hemisphere 0.1
2482 Female, age 94, left hemisphere 0.1
2489 Female, age 72, unknown 0.1
2647 Male, age 75, left hemisphere 0.1
Septal nuclei
nTPM: 0.3
2199 Male, age 80, right hemisphere 1.1
2009 Female, age 91, both hemispheres 0.3
2059 Female, age 85, both hemispheres 0.2
1960 Male, age 74, unknown 0.1
2031 Female, age 72, unknown 0.1
2394 Male, age 61, left hemisphere 0.1
2629 Female, age 94, right hemisphere 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.1
Samples: 246

Max nTPM: 3.4
Min nTPM: 0.0
Std nTPM: 0.3
Median nTPM: 0.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 3.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 2.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 0.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 0.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 0.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 0.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.1
Samples: 246

Max nTPM: 21.3
Min nTPM: 0.0
Std nTPM: 1.3
Median nTPM: 0.0
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 21.3
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 1.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 1.1
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 1.0
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 1.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 0.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 0.7
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 0.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 0.6
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 0.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 0.6
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Brain - Putamen (basal ganglia)
Average nTPM: 0.1
Samples: 205

Max nTPM: 1.7
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 1.7
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 1.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 1.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 0.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 0.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 0.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 0.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 0.7
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 0.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 0.7
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 0.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.3
FF:10175-103C4 60 years, female 0.7
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.5
FF:10037-101F1 23-56 years, mixed 0.5
Putamen
Scaled Tags Per Million: 0.2
FF:10176-103C5 60 years, female 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.