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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA:12.8 nTPM
GTEx:16.2 nTPM
FANTOM5:11.7 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:41.4 nTPM
Allen mouse:4.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.8
Sample id Sample description nTPM
Hippocampus
nTPM: 10.9
2621 Female, age 67, right hemisphere 18.2
2148 Female, age 91, left hemisphere 14.9
1898 Male, age 80, left hemisphere 10.9
1911 Female, age 85, right hemisphere 8.0
1855 Male, age 76, left hemisphere 6.9
2529 Female, age 94, left hemisphere 6.4
Dentate gyrus
nTPM: 12.6
1927 Female, age 91, both hemispheres 23.0
2530 Female, age 94, left hemisphere 14.9
2531 Female, age 67, both hemispheres 13.6
2528 Male, age 74, both hemispheres 9.6
2010 Male, age 76, both hemispheres 7.9
2246 Female, age 85, both hemispheres 6.6
Entorhinal gyrus
nTPM: 9.7
2613 Female, age 94, left hemisphere 22.0
2764 Male, age 80, right hemisphere 8.8
1938 Female, age 85, left hemisphere 8.5
1787 Male, age 76, left hemisphere 8.4
2686 Male, age 75, right hemisphere 7.4
2117 Female, age 91, right hemisphere 3.1
Hippocampus, CA1
nTPM: 11.8
2749 Male, age 80, left hemisphere 23.0
2527 Male, age 74, both hemispheres 13.8
1873 Female, age 85, both hemispheres 11.4
2045 Male, age 76, both hemispheres 7.1
2082 Female, age 91, right hemisphere 3.6
Hippocampus, CA2
nTPM: 9.5
1963 Male, age 80, left hemisphere 18.8
2437 Female, age 94, left hemisphere 14.4
1892 Male, age 76, both hemispheres 12.8
2249 Male, age 74, both hemispheres 5.2
2113 Female, age 91, right hemisphere 3.8
1940 Female, age 85, left hemisphere 1.7
Hippocampus, CA3
nTPM: 12.8
2861 Female, age 67, both hemispheres 20.8
2137 Male, age 80, left hemisphere 19.2
2620 Female, age 94, left hemisphere 17.0
1867 Male, age 76, both hemispheres 8.7
2436 Male, age 74, both hemispheres 5.5
1891 Female, age 85, both hemispheres 5.4
Parahippocampal cortex
nTPM: 8.9
2245 Female, age 91, both hemispheres 14.2
2250 Female, age 67, right hemisphere 13.5
2693 Female, age 94, both hemispheres 10.9
2622 Female, age 67, right hemisphere 10.2
1990 Female, age 91, right hemisphere 9.2
2692 Male, age 74, both hemispheres 7.7
1933 Female, age 85, both hemispheres 7.1
1850 Male, age 80, both hemispheres 6.8
2532 Female, age 72, left hemisphere 6.0
2018 Male, age 76, both hemispheres 2.9
Perirhinal gyrus
nTPM: 9.1
2521 Female, age 94, right hemisphere 14.5
1847 Female, age 91, left hemisphere 12.8
1794 Male, age 80, right hemisphere 8.7
1841 Female, age 85, right hemisphere 5.5
2848 Male, age 76, right hemisphere 3.9
Subiculum
nTPM: 7.1
2438 Female, age 94, left hemisphere 10.8
2619 Male, age 74, both hemispheres 10.1
1901 Male, age 80, both hemispheres 8.8
1977 Female, age 85, both hemispheres 5.8
2729 Female, age 91, right hemisphere 4.8
2042 Male, age 76, both hemispheres 2.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.2
Samples: 197

Max nTPM: 44.1
Min nTPM: 0.7
Std nTPM: 9.7
Median nTPM: 16.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 44.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 42.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 41.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 38.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 37.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 35.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 34.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 34.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 33.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 33.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 33.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 11.7
FF:10153-102I9 76 years, female 11.9
FF:10169-103B7 60 years, female 11.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 11.2
Samples: 4

Max nTPM: 13.0
Min nTPM: 9.9
Sample A Female 13.0
Sample B Female 11.1
Sample C Male 10.8
Sample D Male 9.9
Entorhinal cortex
nTPM: 9.8
Samples: 4

Max nTPM: 10.3
Min nTPM: 9.4
Sample A Female 10.2
Sample B Female 9.4
Sample C Male 10.3
Sample D Male 9.4
Subiculum
nTPM: 9.6
Samples: 4

Max nTPM: 12.5
Min nTPM: 7.4
Sample A Female 12.5
Sample B Female 8.5
Sample C Male 10.1
Sample D Male 7.4
Ventral hippocampus
nTPM: 9.9
Samples: 4

Max nTPM: 12.9
Min nTPM: 6.8
Sample A Female 8.9
Sample B Female 6.8
Sample C Male 12.9
Sample D Male 11.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 41.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.3
Samples: 4

Max nTPM: 34.7
Min nTPM: 29.0
Sample A Male 29.0
Sample B Male 30.5
Sample C Female 30.8
Sample D Female 34.7
Hippocampal formation
nTPM: 41.4
Samples: 4

Max nTPM: 46.9
Min nTPM: 33.0
Sample A Male 33.0
Sample B Male 46.9
Sample C Female 44.1
Sample D Female 41.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.9
77454724 Antisense, RP_070129_01_D06, Mouse strain C57BL/6J (56 days, male) 9.5
1026 Antisense, RP_Baylor_103054, Mouse strain C57BL/6J (56 days, male) 5.2
1027 Antisense, RP_Baylor_103054, Mouse strain C57BL/6J (56 days, male) 4.5
1028 Sense, RPS_Baylor_37051, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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