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VDAC1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:116.7 nTPM
HPA:116.7 nTPM
GTEx:133.3 nTPM
FANTOM5:183.8 Scaled Tags Per Million
Pig:135.5 nTPM
Mouse:477.2 nTPM
Allen mouse:18.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030780Antibody CAB005885Antibody CAB072343
Glial cells Not detectedHighNot detected
Neuronal cells MediumHighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 116.7
Sample id Sample description nTPM
Hippocampus
nTPM: 101.2
1898 Male, age 80, left hemisphere 122.2
1855 Male, age 76, left hemisphere 103.9
2621 Female, age 67, right hemisphere 101.0
2529 Female, age 94, left hemisphere 95.3
2148 Female, age 91, left hemisphere 93.1
1911 Female, age 85, right hemisphere 91.6
Dentate gyrus
nTPM: 102.6
1927 Female, age 91, both hemispheres 116.2
2010 Male, age 76, both hemispheres 112.8
2246 Female, age 85, both hemispheres 103.6
2530 Female, age 94, left hemisphere 99.1
2528 Male, age 74, both hemispheres 96.2
2531 Female, age 67, both hemispheres 87.5
Entorhinal gyrus
nTPM: 96.4
2764 Male, age 80, right hemisphere 105.3
1938 Female, age 85, left hemisphere 103.3
1787 Male, age 76, left hemisphere 98.6
2613 Female, age 94, left hemisphere 93.8
2117 Female, age 91, right hemisphere 90.0
2686 Male, age 75, right hemisphere 87.1
Hippocampus, CA1
nTPM: 111.9
2749 Male, age 80, left hemisphere 150.0
1873 Female, age 85, both hemispheres 107.5
2045 Male, age 76, both hemispheres 106.6
2527 Male, age 74, both hemispheres 103.9
2082 Female, age 91, right hemisphere 91.5
Hippocampus, CA2
nTPM: 106.5
1892 Male, age 76, both hemispheres 124.2
1963 Male, age 80, left hemisphere 118.7
2249 Male, age 74, both hemispheres 113.2
1940 Female, age 85, left hemisphere 99.1
2113 Female, age 91, right hemisphere 92.3
2437 Female, age 94, left hemisphere 91.8
Hippocampus, CA3
nTPM: 106.8
2436 Male, age 74, both hemispheres 126.4
2137 Male, age 80, left hemisphere 125.4
1867 Male, age 76, both hemispheres 109.6
2620 Female, age 94, left hemisphere 98.7
1891 Female, age 85, both hemispheres 94.4
2861 Female, age 67, both hemispheres 86.6
Parahippocampal cortex
nTPM: 103.5
1850 Male, age 80, both hemispheres 118.4
2245 Female, age 91, both hemispheres 113.0
2250 Female, age 67, right hemisphere 111.1
1990 Female, age 91, right hemisphere 105.2
1933 Female, age 85, both hemispheres 105.0
2018 Male, age 76, both hemispheres 103.8
2532 Female, age 72, left hemisphere 103.1
2693 Female, age 94, both hemispheres 96.8
2692 Male, age 74, both hemispheres 91.3
2622 Female, age 67, right hemisphere 87.8
Perirhinal gyrus
nTPM: 116.7
1847 Female, age 91, left hemisphere 130.0
1794 Male, age 80, right hemisphere 121.5
1841 Female, age 85, right hemisphere 119.6
2521 Female, age 94, right hemisphere 111.9
2848 Male, age 76, right hemisphere 100.7
Subiculum
nTPM: 96.0
1901 Male, age 80, both hemispheres 105.2
1977 Female, age 85, both hemispheres 105.0
2619 Male, age 74, both hemispheres 94.3
2438 Female, age 94, left hemisphere 93.8
2042 Male, age 76, both hemispheres 90.9
2729 Female, age 91, right hemisphere 86.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 133.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 133.3
Samples: 197

Max nTPM: 296.1
Min nTPM: 52.4
Std nTPM: 52.7
Median nTPM: 126.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 296.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 271.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 246.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 241.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 238.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 236.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 232.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 229.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 225.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 224.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 224.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 183.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 183.8
FF:10169-103B7 60 years, female 228.1
FF:10153-102I9 76 years, female 139.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 135.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 130.0
Samples: 4

Max nTPM: 164.1
Min nTPM: 100.9
Sample A Female 164.1
Sample B Female 127.9
Sample C Male 127.1
Sample D Male 100.9
Entorhinal cortex
nTPM: 135.5
Samples: 4

Max nTPM: 157.6
Min nTPM: 113.1
Sample A Female 137.0
Sample B Female 157.6
Sample C Male 134.2
Sample D Male 113.1
Subiculum
nTPM: 125.7
Samples: 4

Max nTPM: 160.1
Min nTPM: 110.3
Sample A Female 160.1
Sample B Female 112.2
Sample C Male 110.3
Sample D Male 120.3
Ventral hippocampus
nTPM: 124.6
Samples: 4

Max nTPM: 153.3
Min nTPM: 92.6
Sample A Female 142.3
Sample B Female 92.6
Sample C Male 153.3
Sample D Male 110.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 477.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 466.4
Samples: 4

Max nTPM: 515.6
Min nTPM: 437.9
Sample A Male 451.7
Sample B Male 460.2
Sample C Female 437.9
Sample D Female 515.6
Hippocampal formation
nTPM: 477.2
Samples: 4

Max nTPM: 495.6
Min nTPM: 457.2
Sample A Male 495.6
Sample B Male 484.2
Sample C Female 471.7
Sample D Female 457.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 18.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.9
70194916 Antisense, RP_050517_02_A06, Mouse strain C57BL/6J (56 days, male) 20.7
70918898 Antisense, RP_050712_04_G03, Mouse strain C57BL/6J (56 days, male) 18.6
74957912 Antisense, RP_060315_05_A09, Mouse strain C57BL/6J (56 days, male) 17.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.