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PPM1N
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.7 nTPM
HPA:14.7 nTPM
GTEx:3.3 nTPM
FANTOM5:2.9 Scaled Tags Per Million
Pig:2.9 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.6
2481 Female, age 94, left hemisphere 15.7
1854 Male, age 80, left hemisphere 15.1
1857 Female, age 85, left hemisphere 14.9
2288 Male, age 75, left hemisphere 14.8
2289 Male, age 61, right hemisphere 14.4
1781 Male, age 74, unknown 14.1
2290 Female, age 72, unknown 13.9
2846 Female, age 79, unknown 13.8
Claustrum
nTPM: 14.3
1956 Male, age 74, unknown 15.1
2491 Male, age 75, both hemispheres 14.9
2196 Female, age 79, unknown 14.4
2198 Male, age 80, both hemispheres 14.4
2284 Female, age 91, both hemispheres 14.1
2292 Female, age 85, both hemispheres 14.1
2392 Female, age 94, both hemispheres 14.1
2645 Female, age 72, unknown 13.7
2568 Male, age 61, both hemispheres 13.5
Globus pallidus, externus
nTPM: 13.6
1996 Male, age 80, right hemisphere 14.4
2395 Male, age 75, both hemispheres 14.1
2772 Female, age 79, unknown 13.5
2567 Female, age 72, unknown 13.1
2646 Male, age 61, right hemisphere 13.1
Globus pallidus, internus
nTPM: 13.9
2037 Male, age 80, right hemisphere 14.5
2111 Female, age 85, right hemisphere 14.5
2483 Female, age 94, right hemisphere 14.0
2287 Male, age 75, right hemisphere 13.8
1818 Male, age 74, unknown 13.6
2778 Female, age 91, both hemispheres 13.6
2566 Female, age 72, unknown 13.5
Nucleus accumbens
nTPM: 14.2
1783 Male, age 74, unknown 14.9
1806 Female, age 85, left hemisphere 14.9
1856 Female, age 91, right hemisphere 14.5
2732 Male, age 80, right hemisphere 14.3
2286 Male, age 75, left hemisphere 14.1
2824 Male, age 61, right hemisphere 13.9
2391 Female, age 94, left hemisphere 13.7
2698 Female, age 72, unknown 13.3
Nucleus basalis of Meynert
nTPM: 14.2
2484 Female, age 94, left hemisphere 14.8
2393 Male, age 80, right hemisphere 14.6
2821 Male, age 75, both hemispheres 14.1
2569 Male, age 61, both hemispheres 13.4
Nucleus of the diagonal band
nTPM: 14.7
2029 Male, age 61, right hemisphere 15.6
1812 Female, age 91, both hemispheres 14.8
2775 Male, age 80, right hemisphere 14.4
2195 Female, age 85, both hemispheres 14.3
1979 Male, age 74, unknown 14.2
Olfactory tubercle
nTPM: 14.6
1998 Female, age 91, both hemispheres 15.3
2487 Female, age 94, left hemisphere 14.9
1846 Male, age 80, right hemisphere 14.2
2856 Male, age 75, right hemisphere 14.2
Putamen
nTPM: 14.7
1937 Female, age 91, right hemisphere 15.4
2482 Female, age 94, left hemisphere 14.9
1838 Male, age 80, right hemisphere 14.8
2466 Female, age 79, unknown 14.8
1829 Male, age 74, unknown 14.5
2489 Female, age 72, unknown 14.4
2647 Male, age 75, left hemisphere 13.8
Septal nuclei
nTPM: 14.1
2009 Female, age 91, both hemispheres 14.5
2031 Female, age 72, unknown 14.4
2629 Female, age 94, right hemisphere 14.1
1960 Male, age 74, unknown 14.0
2394 Male, age 61, left hemisphere 13.9
2059 Female, age 85, both hemispheres 13.8
2199 Male, age 80, right hemisphere 13.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.5
Samples: 246

Max nTPM: 7.8
Min nTPM: 0.5
Std nTPM: 1.1
Median nTPM: 2.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 7.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 6.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 6.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 5.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 5.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 5.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 5.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 4.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 4.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 4.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.3
Samples: 246

Max nTPM: 16.8
Min nTPM: 0.0
Std nTPM: 1.9
Median nTPM: 2.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 16.8
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 13.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 10.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 10.2
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 8.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 8.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 8.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 8.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 8.2
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 8.1
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 7.4
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Brain - Putamen (basal ganglia)
Average nTPM: 2.7
Samples: 205

Max nTPM: 8.9
Min nTPM: 0.4
Std nTPM: 1.2
Median nTPM: 2.5
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 8.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 7.6
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 7.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 6.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 6.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 5.4
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 5.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 5.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 4.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 4.8
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 4.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.9
FF:10164-103B2 76 years, female 2.9
Globus pallidus
Scaled Tags Per Million: 2.0
FF:10161-103A8 76 years, female 2.5
FF:10175-103C4 60 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 1.1
FF:10037-101F1 23-56 years, mixed 1.1
Putamen
Scaled Tags Per Million: 1.4
FF:10176-103C5 60 years, female 1.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.9
Pig sample Sample description nTPM
Caudate
nTPM: 2.9
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.1
Sample A Female 3.0
Sample B Female 3.4
Sample C Male 2.1
Sample D Male 3.2
Putamen
nTPM: 2.7
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.9
Sample A Female 2.6
Sample B Female 3.3
Sample C Male 1.9
Sample D Male 2.9
Septum
nTPM: 2.8
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.4
Sample A Female 3.0
Sample B Female 3.0
Sample C Male 2.4
Sample D Male 2.6
Ventral pallidum
nTPM: 2.9
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.3
Sample A Female 3.5
Sample B Female 3.0
Sample C Male 2.3
Sample D Male 2.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71574600 Antisense, RP_050915_04_A08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
71574600 Antisense, RP_050915_04_A08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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