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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.7 nTPM
HPA:5.7 nTPM
GTEx:8.4 nTPM
FANTOM5:16.7 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:3.4 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.6
2219 Male, age 76, both hemispheres 6.0
2828 Female, age 72, unknown 5.4
2586 Male, age 75, left hemisphere 4.9
1827 Male, age 72, unknown 4.8
1833 Male, age 53, unknown 4.5
1870 Female, age 42, unknown 4.3
2019 Male, age 18, unknown 4.3
2411 Female, age 72, unknown 4.3
2666 Male, age 74, left hemisphere 4.3
1830 Male, age 51, unknown 3.5
Dorsal raphe nucleus
nTPM: 5.0
2298 Female, age 72, unknown 6.3
1828 Male, age 53, unknown 5.3
2016 Female, age 72, unknown 5.1
2047 Male, age 72, unknown 4.7
2750 Male, age 76, both hemispheres 3.5
Inferior colliculus
nTPM: 4.9
1890 Male, age 53, unknown 5.9
2097 Female, age 72, unknown 5.2
2849 Male, age 72, unknown 4.7
1848 Female, age 42, unknown 3.7
Median raphe nucleus
nTPM: 3.8
2220 Male, age 76, midline 3.8
Pedunculopontine tegmental nucleus
nTPM: 5.1
1921 Female, age 85, both hemispheres 7.2
2334 Male, age 80, both hemispheres 4.9
2338 Male, age 61, both hemispheres 3.3
Periaquaductal grey, anterior
nTPM: 4.0
1795 Male, age 51, unknown 4.7
2502 Female, age 75, unknown 4.2
1947 Male, age 18, unknown 3.2
Periaquaductal grey, dorsal
nTPM: 4.3
1831 Male, age 72, unknown 4.7
1840 Male, age 53, unknown 4.3
2850 Male, age 76, both hemispheres 4.2
2464 Female, age 72, unknown 4.1
Periaquaductal grey, lateral
nTPM: 4.2
2053 Male, age 18, unknown 4.4
2140 Male, age 76, both hemispheres 4.3
2272 Male, age 74, both hemispheres 3.9
Pretectal area
nTPM: 5.7
1817 Female, age 42, unknown 7.7
2007 Male, age 72, unknown 7.0
1816 Male, age 51, unknown 6.4
2667 Female, age 75, unknown 6.2
1815 Male, age 53, unknown 5.9
2273 Male, age 74, both hemispheres 5.9
2224 Female, age 72, unknown 5.2
2316 Male, age 76, right hemisphere 5.0
2825 Male, age 18, unknown 4.9
1944 Female, age 72, unknown 4.5
2407 Male, age 75, both hemispheres 4.5
Red nucleus
nTPM: 5.0
2785 Male, age 18, unknown 6.4
2823 Male, age 76, right hemisphere 5.9
2725 Female, age 75, unknown 5.5
1821 Female, age 72, unknown 5.4
2588 Male, age 74, left hemisphere 5.2
2769 Male, age 72, unknown 4.9
2503 Female, age 72, unknown 4.7
2584 Male, age 75, left hemisphere 4.7
1904 Male, age 53, unknown 4.5
1954 Female, age 42, unknown 4.4
2227 Male, age 72, unknown 4.4
1865 Male, age 51, unknown 4.2
Substantia nigra
nTPM: 5.4
1851 Male, age 51, unknown 7.2
2409 Female, age 72, unknown 7.2
1889 Female, age 72, unknown 7.1
1916 Female, age 42, unknown 6.0
2699 Male, age 18, unknown 5.6
2241 Male, age 72, unknown 5.3
1941 Male, age 53, unknown 4.3
2665 Male, age 74, both hemispheres 4.2
2583 Male, age 75, right hemisphere 4.0
2590 Female, age 75, unknown 3.0
Superior colliculus
nTPM: 5.3
2668 Female, age 75, unknown 6.9
1895 Male, age 76, right hemisphere 6.2
2664 Male, age 75, both hemispheres 6.2
2087 Female, age 72, unknown 5.8
2261 Male, age 18, unknown 5.6
1796 Male, age 53, unknown 5.4
1839 Male, age 51, unknown 4.7
1995 Male, age 72, unknown 4.6
1913 Female, age 42, unknown 4.2
2587 Male, age 74, left hemisphere 3.9
Ventral tegmental area
nTPM: 5.0
1915 Female, age 42, unknown 6.2
2218 Male, age 76, both hemispheres 5.8
2021 Male, age 53, unknown 4.8
1942 Male, age 51, unknown 4.6
2223 Female, age 72, unknown 4.4
2410 Female, age 72, unknown 4.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.4
Samples: 139

Max nTPM: 22.0
Min nTPM: 0.7
Std nTPM: 4.5
Median nTPM: 7.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 22.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 20.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 18.5
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 18.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 18.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 16.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 16.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 16.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 15.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 15.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.7
FF:10158-103A5 76 years, female 16.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.0
Pig sample Sample description nTPM
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.5
Sample A Female 10.5
Sample B Female 10.7
Sample C Male 13.4
Sample D Male 11.2
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 13.1
Min nTPM: 8.8
Sample B Female 10.5
Sample C Male 13.1
Sample D Male 8.8
Substantia nigra
nTPM: 13.0
Samples: 4

Max nTPM: 16.5
Min nTPM: 9.5
Sample A Female 16.5
Sample B Female 11.3
Sample C Male 14.8
Sample D Male 9.5
Superior colliculi
nTPM: 12.7
Samples: 4

Max nTPM: 15.0
Min nTPM: 10.5
Sample A Female 15.0
Sample B Female 12.6
Sample C Male 12.8
Sample D Male 10.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.4
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.5
Sample A Male 2.8
Sample B Male 3.6
Sample C Female 2.5
Sample D Female 4.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
513017 Antisense, RP_040810_01_A08, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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