ABOUTMENU
HELP
NEWS
ARL16
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.2 nTPM
HPA:22.2 nTPM
GTEx:34.8 nTPM
FANTOM5:26.2 Scaled Tags Per Million
Mouse:13.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.5
2586 Male, age 75, left hemisphere 22.9
2411 Female, age 72, unknown 22.7
1827 Male, age 72, unknown 22.3
1870 Female, age 42, unknown 22.0
2019 Male, age 18, unknown 21.5
1830 Male, age 51, unknown 21.0
2828 Female, age 72, unknown 20.9
2219 Male, age 76, both hemispheres 20.8
1833 Male, age 53, unknown 20.7
2666 Male, age 74, left hemisphere 20.7
Dorsal raphe nucleus
nTPM: 21.6
2298 Female, age 72, unknown 22.9
2047 Male, age 72, unknown 21.6
2750 Male, age 76, both hemispheres 21.4
1828 Male, age 53, unknown 21.1
2016 Female, age 72, unknown 20.8
Inferior colliculus
nTPM: 21.1
2097 Female, age 72, unknown 21.6
1890 Male, age 53, unknown 21.4
2849 Male, age 72, unknown 20.9
1848 Female, age 42, unknown 20.7
Median raphe nucleus
nTPM: 21.0
2220 Male, age 76, midline 21.0
Pedunculopontine tegmental nucleus
nTPM: 21.2
1921 Female, age 85, both hemispheres 21.5
2334 Male, age 80, both hemispheres 21.5
2338 Male, age 61, both hemispheres 20.5
Periaquaductal grey, anterior
nTPM: 22.1
1947 Male, age 18, unknown 22.4
2502 Female, age 75, unknown 22.2
1795 Male, age 51, unknown 21.8
Periaquaductal grey, dorsal
nTPM: 21.4
1831 Male, age 72, unknown 22.1
1840 Male, age 53, unknown 21.6
2464 Female, age 72, unknown 21.1
2850 Male, age 76, both hemispheres 20.7
Periaquaductal grey, lateral
nTPM: 21.3
2053 Male, age 18, unknown 21.6
2140 Male, age 76, both hemispheres 21.1
2272 Male, age 74, both hemispheres 21.1
Pretectal area
nTPM: 22.2
1816 Male, age 51, unknown 24.1
2007 Male, age 72, unknown 23.2
1817 Female, age 42, unknown 22.8
1815 Male, age 53, unknown 22.7
2667 Female, age 75, unknown 22.4
1944 Female, age 72, unknown 22.3
2224 Female, age 72, unknown 21.9
2273 Male, age 74, both hemispheres 21.9
2825 Male, age 18, unknown 21.4
2407 Male, age 75, both hemispheres 21.1
2316 Male, age 76, right hemisphere 20.9
Red nucleus
nTPM: 21.6
1954 Female, age 42, unknown 22.2
2503 Female, age 72, unknown 22.1
1821 Female, age 72, unknown 22.0
2785 Male, age 18, unknown 22.0
2584 Male, age 75, left hemisphere 21.9
2588 Male, age 74, left hemisphere 21.8
1865 Male, age 51, unknown 21.5
1904 Male, age 53, unknown 21.2
2725 Female, age 75, unknown 21.1
2823 Male, age 76, right hemisphere 21.1
2769 Male, age 72, unknown 21.0
2227 Male, age 72, unknown 20.8
Substantia nigra
nTPM: 22.0
1851 Male, age 51, unknown 23.0
2665 Male, age 74, both hemispheres 22.9
1916 Female, age 42, unknown 22.6
1889 Female, age 72, unknown 22.5
1941 Male, age 53, unknown 22.1
2590 Female, age 75, unknown 21.8
2583 Male, age 75, right hemisphere 21.6
2241 Male, age 72, unknown 21.3
2699 Male, age 18, unknown 21.2
2409 Female, age 72, unknown 20.6
Superior colliculus
nTPM: 22.1
2087 Female, age 72, unknown 23.5
1796 Male, age 53, unknown 23.1
2261 Male, age 18, unknown 22.7
2668 Female, age 75, unknown 22.5
2587 Male, age 74, left hemisphere 22.4
2664 Male, age 75, both hemispheres 21.9
1995 Male, age 72, unknown 21.8
1913 Female, age 42, unknown 21.6
1839 Male, age 51, unknown 21.0
1895 Male, age 76, right hemisphere 21.0
Ventral tegmental area
nTPM: 22.0
2410 Female, age 72, unknown 23.0
2223 Female, age 72, unknown 22.6
1915 Female, age 42, unknown 21.8
2021 Male, age 53, unknown 21.6
1942 Male, age 51, unknown 21.4
2218 Male, age 76, both hemispheres 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.8
Samples: 139

Max nTPM: 69.8
Min nTPM: 12.3
Std nTPM: 9.3
Median nTPM: 33.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 61.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 58.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 56.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 54.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 52.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 51.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 49.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 48.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 47.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 47.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.2
FF:10158-103A5 76 years, female 26.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 15.7
Min nTPM: 11.4
Sample A Male 14.7
Sample B Male 11.4
Sample C Female 13.1
Sample D Female 15.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.