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SMIM30
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.7 nTPM
HPA:40.7 nTPM
GTEx:37.4 nTPM
FANTOM5:10.9 Scaled Tags Per Million
Mouse:54.1 nTPM
Allen mouse:3.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.7
Sample id Sample description nTPM
Hippocampus
nTPM: 39.9
1855 Male, age 76, left hemisphere 42.5
1898 Male, age 80, left hemisphere 40.7
1911 Female, age 85, right hemisphere 40.2
2529 Female, age 94, left hemisphere 39.6
2148 Female, age 91, left hemisphere 38.4
2621 Female, age 67, right hemisphere 38.0
Dentate gyrus
nTPM: 38.9
2010 Male, age 76, both hemispheres 41.9
1927 Female, age 91, both hemispheres 39.2
2246 Female, age 85, both hemispheres 39.1
2528 Male, age 74, both hemispheres 38.5
2530 Female, age 94, left hemisphere 37.9
2531 Female, age 67, both hemispheres 36.6
Entorhinal gyrus
nTPM: 37.7
1938 Female, age 85, left hemisphere 39.7
2117 Female, age 91, right hemisphere 39.2
1787 Male, age 76, left hemisphere 38.5
2764 Male, age 80, right hemisphere 36.9
2686 Male, age 75, right hemisphere 36.4
2613 Female, age 94, left hemisphere 35.2
Hippocampus, CA1
nTPM: 40.7
2045 Male, age 76, both hemispheres 41.8
1873 Female, age 85, both hemispheres 41.2
2749 Male, age 80, left hemisphere 40.9
2527 Male, age 74, both hemispheres 40.8
2082 Female, age 91, right hemisphere 39.1
Hippocampus, CA2
nTPM: 39.6
2249 Male, age 74, both hemispheres 42.4
1892 Male, age 76, both hemispheres 41.0
1963 Male, age 80, left hemisphere 39.4
1940 Female, age 85, left hemisphere 38.6
2113 Female, age 91, right hemisphere 38.6
2437 Female, age 94, left hemisphere 37.4
Hippocampus, CA3
nTPM: 39.5
2137 Male, age 80, left hemisphere 41.7
2436 Male, age 74, both hemispheres 41.2
1867 Male, age 76, both hemispheres 41.1
1891 Female, age 85, both hemispheres 40.0
2861 Female, age 67, both hemispheres 36.4
2620 Female, age 94, left hemisphere 36.2
Parahippocampal cortex
nTPM: 38.4
2018 Male, age 76, both hemispheres 41.5
2250 Female, age 67, right hemisphere 40.9
1933 Female, age 85, both hemispheres 39.3
1850 Male, age 80, both hemispheres 38.7
2245 Female, age 91, both hemispheres 38.5
1990 Female, age 91, right hemisphere 38.0
2692 Male, age 74, both hemispheres 37.5
2693 Female, age 94, both hemispheres 37.5
2532 Female, age 72, left hemisphere 37.4
2622 Female, age 67, right hemisphere 34.9
Perirhinal gyrus
nTPM: 38.9
1847 Female, age 91, left hemisphere 39.8
1841 Female, age 85, right hemisphere 39.4
2521 Female, age 94, right hemisphere 39.2
1794 Male, age 80, right hemisphere 38.2
2848 Male, age 76, right hemisphere 38.1
Subiculum
nTPM: 38.7
2729 Female, age 91, right hemisphere 40.3
1977 Female, age 85, both hemispheres 39.7
1901 Male, age 80, both hemispheres 39.1
2042 Male, age 76, both hemispheres 38.4
2619 Male, age 74, both hemispheres 38.1
2438 Female, age 94, left hemisphere 36.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 37.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.4
Samples: 197

Max nTPM: 83.7
Min nTPM: 19.8
Std nTPM: 9.3
Median nTPM: 36.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 83.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 72.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 61.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 60.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 60.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 59.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 59.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 56.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 55.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 54.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 54.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 10.9
FF:10169-103B7 60 years, female 12.5
FF:10153-102I9 76 years, female 9.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 54.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 52.5
Samples: 4

Max nTPM: 57.8
Min nTPM: 49.0
Sample A Male 51.2
Sample B Male 49.0
Sample C Female 57.8
Sample D Female 51.9
Hippocampal formation
nTPM: 54.1
Samples: 4

Max nTPM: 62.6
Min nTPM: 48.9
Sample A Male 62.6
Sample B Male 50.1
Sample C Female 54.7
Sample D Female 48.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.1
69202782 Antisense, RP_050324_04_D04, Mouse strain C57BL/6J (56 days, male) 3.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.