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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.0 nTPM
HPA:24.0 nTPM
GTEx:34.7 nTPM
FANTOM5:22.9 Scaled Tags Per Million
Pig:23.8 nTPM
Mouse:71.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.8
1827 Male, age 72, unknown 24.0
2411 Female, age 72, unknown 23.9
1833 Male, age 53, unknown 23.7
2219 Male, age 76, both hemispheres 23.5
2019 Male, age 18, unknown 23.2
1870 Female, age 42, unknown 23.1
2666 Male, age 74, left hemisphere 22.7
1830 Male, age 51, unknown 22.5
2828 Female, age 72, unknown 22.4
2586 Male, age 75, left hemisphere 19.4
Dorsal raphe nucleus
nTPM: 22.5
1828 Male, age 53, unknown 23.0
2750 Male, age 76, both hemispheres 22.8
2016 Female, age 72, unknown 22.5
2047 Male, age 72, unknown 22.5
2298 Female, age 72, unknown 21.3
Inferior colliculus
nTPM: 23.2
1848 Female, age 42, unknown 24.2
2849 Male, age 72, unknown 23.1
1890 Male, age 53, unknown 22.8
2097 Female, age 72, unknown 22.7
Median raphe nucleus
nTPM: 23.0
2220 Male, age 76, midline 23.0
Pedunculopontine tegmental nucleus
nTPM: 24.0
2338 Male, age 61, both hemispheres 27.6
2334 Male, age 80, both hemispheres 22.3
1921 Female, age 85, both hemispheres 22.1
Periaquaductal grey, anterior
nTPM: 21.3
2502 Female, age 75, unknown 21.7
1795 Male, age 51, unknown 21.2
1947 Male, age 18, unknown 20.9
Periaquaductal grey, dorsal
nTPM: 23.3
1840 Male, age 53, unknown 24.2
2850 Male, age 76, both hemispheres 23.7
1831 Male, age 72, unknown 23.0
2464 Female, age 72, unknown 22.3
Periaquaductal grey, lateral
nTPM: 21.6
2272 Male, age 74, both hemispheres 22.3
2053 Male, age 18, unknown 21.6
2140 Male, age 76, both hemispheres 21.0
Pretectal area
nTPM: 23.7
1816 Male, age 51, unknown 25.1
2407 Male, age 75, both hemispheres 24.9
2273 Male, age 74, both hemispheres 24.3
2667 Female, age 75, unknown 24.3
1815 Male, age 53, unknown 24.1
1944 Female, age 72, unknown 23.6
2825 Male, age 18, unknown 23.5
1817 Female, age 42, unknown 23.3
2007 Male, age 72, unknown 23.3
2224 Female, age 72, unknown 22.3
2316 Male, age 76, right hemisphere 21.7
Red nucleus
nTPM: 22.8
2584 Male, age 75, left hemisphere 24.9
2823 Male, age 76, right hemisphere 24.2
2588 Male, age 74, left hemisphere 23.8
2227 Male, age 72, unknown 23.1
1821 Female, age 72, unknown 22.9
1954 Female, age 42, unknown 22.9
1904 Male, age 53, unknown 22.2
2785 Male, age 18, unknown 22.2
2503 Female, age 72, unknown 22.1
2725 Female, age 75, unknown 21.7
1865 Male, age 51, unknown 21.6
2769 Male, age 72, unknown 21.6
Substantia nigra
nTPM: 23.0
2241 Male, age 72, unknown 24.8
1889 Female, age 72, unknown 24.3
2583 Male, age 75, right hemisphere 23.2
1916 Female, age 42, unknown 22.9
2590 Female, age 75, unknown 22.9
1851 Male, age 51, unknown 22.8
2699 Male, age 18, unknown 22.8
1941 Male, age 53, unknown 22.7
2409 Female, age 72, unknown 21.9
2665 Male, age 74, both hemispheres 21.3
Superior colliculus
nTPM: 23.1
2664 Male, age 75, both hemispheres 25.2
1839 Male, age 51, unknown 23.8
2261 Male, age 18, unknown 23.8
1895 Male, age 76, right hemisphere 23.3
2087 Female, age 72, unknown 23.1
2668 Female, age 75, unknown 23.1
2587 Male, age 74, left hemisphere 23.0
1913 Female, age 42, unknown 22.2
1995 Male, age 72, unknown 21.7
1796 Male, age 53, unknown 21.6
Ventral tegmental area
nTPM: 22.7
2218 Male, age 76, both hemispheres 23.4
2223 Female, age 72, unknown 23.1
2021 Male, age 53, unknown 22.7
2410 Female, age 72, unknown 22.5
1915 Female, age 42, unknown 22.3
1942 Male, age 51, unknown 22.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.7
Samples: 139

Max nTPM: 56.0
Min nTPM: 19.0
Std nTPM: 6.9
Median nTPM: 33.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 56.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 53.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 52.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 52.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 51.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 48.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 48.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 48.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 48.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 48.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 46.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.9
FF:10158-103A5 76 years, female 22.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.8
Pig sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 24.0
Min nTPM: 23.2
Sample A Female 24.0
Sample B Female 23.9
Sample C Male 23.2
Sample D Male 23.9
Periaqueductal gray
nTPM: 22.1
Samples: 3

Max nTPM: 22.8
Min nTPM: 21.2
Sample B Female 21.2
Sample C Male 22.2
Sample D Male 22.8
Substantia nigra
nTPM: 21.3
Samples: 4

Max nTPM: 23.2
Min nTPM: 18.7
Sample A Female 23.2
Sample B Female 20.8
Sample C Male 22.4
Sample D Male 18.7
Superior colliculi
nTPM: 22.1
Samples: 4

Max nTPM: 23.7
Min nTPM: 19.3
Sample A Female 23.0
Sample B Female 19.3
Sample C Male 23.7
Sample D Male 22.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.3
Samples: 4

Max nTPM: 73.0
Min nTPM: 69.0
Sample A Male 71.3
Sample B Male 72.0
Sample C Female 69.0
Sample D Female 73.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.