Single cell type - ZNF844 - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	ZNF844
Gene descriptionⁱ Full gene name according to HGNC.	Zinc finger protein 844
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Cancer-related genes Transcription factors
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	3

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Photoreceptor cells - Phototransduction (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Rod photoreceptor cells)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Immune cell enhanced (basophil)
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in some
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Cell line enhanced (U-266/84)
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Rod photoreceptor cells)

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

ZNF844 is part of cluster 46 Photoreceptor cells - Phototransduction with confidenceⁱ 1
209 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
RGS9	Regulator of G protein signaling 9	0.6096	46
PPEF2	Protein phosphatase with EF-hand domain 2	0.5963	46
OR5P2	Olfactory receptor family 5 subfamily P member 2	0.5911	46
OR5P3	Olfactory receptor family 5 subfamily P member 3	0.5900	46
ZMYND19	Zinc finger MYND-type containing 19	0.5879	46
NR2E3	Nuclear receptor subfamily 2 group E member 3	0.5869	46
KLHL34	Kelch like family member 34	0.5820	46
CABP4	Calcium binding protein 4	0.5813	46
GRK1	G protein-coupled receptor kinase 1	0.5809	46
CNGB1	Cyclic nucleotide gated channel subunit beta 1	0.5784	46
RAX2	Retina and anterior neural fold homeobox 2	0.5764	46
SPINT4	Serine peptidase inhibitor, Kunitz type 4	0.5762	46
GUCY2F	Guanylate cyclase 2F, retinal	0.5747	46
CRX	Cone-rod homeobox	0.5720	46
KCNJ14	Potassium inwardly rectifying channel subfamily J member 14	0.5716	46

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	20.0 nTPM
Breast	25.4 nTPM
Adipose tissue	14.7 nTPM

Alveolar cells type 1	16.0 nTPM
Lung	16.0 nTPM

Alveolar cells type 2	11.5 nTPM
Lung	11.5 nTPM

Astrocytes	4.2 nTPM
Brain	4.2 nTPM

B-cells	16.0 nTPM
Breast	41.5 nTPM
Lymph node	28.3 nTPM
Adipose tissue	19.5 nTPM
Bone marrow	18.0 nTPM
Spleen	13.9 nTPM
Stomach	10.5 nTPM
PBMC	9.9 nTPM
Kidney	9.5 nTPM
Colon	6.4 nTPM
Liver	2.1 nTPM

Dendritic cells	6.8 nTPM
Adipose tissue	14.9 nTPM
Breast	5.4 nTPM
PBMC	0.0 nTPM

Endothelial cells	10.2 nTPM
Eye	25.9 nTPM
Esophagus	20.0 nTPM
Skeletal muscle	17.4 nTPM
Breast	15.2 nTPM
Endometrium	13.0 nTPM
Heart muscle	11.1 nTPM
Prostate	9.6 nTPM
Liver	8.2 nTPM
Skin	5.8 nTPM
Pancreas	3.9 nTPM
Testis	3.8 nTPM
Lung	3.1 nTPM
Ovary	3.0 nTPM
Placenta	2.9 nTPM

Fibroblasts	13.4 nTPM
Heart muscle	32.9 nTPM
Esophagus	22.7 nTPM
Stomach	17.8 nTPM
Adipose tissue	14.2 nTPM
Breast	13.9 nTPM
Skeletal muscle	13.1 nTPM
Prostate	9.8 nTPM
Lung	8.9 nTPM
Placenta	5.0 nTPM
Skin	4.7 nTPM
Ovary	4.5 nTPM

Intestinal goblet cells	8.4 nTPM
Rectum	12.2 nTPM
Colon	6.5 nTPM
Small intestine	6.4 nTPM

Macrophages	9.7 nTPM
Breast	39.8 nTPM
Adipose tissue	14.2 nTPM
Skeletal muscle	13.2 nTPM
Esophagus	12.6 nTPM
Ovary	12.5 nTPM
Lung	12.3 nTPM
Endometrium	10.3 nTPM
Prostate	9.1 nTPM
Spleen	6.2 nTPM
Testis	5.8 nTPM
Bone marrow	3.7 nTPM
Kidney	3.0 nTPM
Pancreas	2.5 nTPM
PBMC	0.0 nTPM
Stomach	0.0 nTPM

Paneth cells	7.6 nTPM
Colon	9.9 nTPM
Rectum	9.1 nTPM
Small intestine	3.7 nTPM

Plasma cells	6.4 nTPM
Esophagus	12.3 nTPM
Stomach	8.7 nTPM
Adipose tissue	8.4 nTPM
Bone marrow	1.7 nTPM
Spleen	1.0 nTPM

Respiratory ciliated cells	7.7 nTPM
Lung	10.2 nTPM
Bronchus	5.1 nTPM

Smooth muscle cells	12.6 nTPM
Esophagus	26.4 nTPM
Skeletal muscle	24.1 nTPM
Breast	20.2 nTPM
Adipose tissue	18.8 nTPM
Endometrium	17.0 nTPM
Prostate	11.2 nTPM
Heart muscle	7.1 nTPM
Skin	6.6 nTPM
Ovary	5.1 nTPM
Pancreas	1.7 nTPM
Bronchus	1.0 nTPM

T-cells	5.8 nTPM
Endometrium	13.6 nTPM
Esophagus	13.1 nTPM
Skeletal muscle	10.2 nTPM
Lymph node	7.4 nTPM
Ovary	6.7 nTPM
Breast	6.7 nTPM
Lung	6.1 nTPM
Adipose tissue	5.6 nTPM
Spleen	5.2 nTPM
PBMC	4.5 nTPM
Bone marrow	4.3 nTPM
Skin	3.6 nTPM
Colon	3.3 nTPM
Liver	2.9 nTPM
Kidney	2.7 nTPM
Stomach	2.6 nTPM
Prostate	0.0 nTPM

Basal keratinocytes	2.4 nTPM
Skin	2.4 nTPM

Basal respiratory cells	2.2 nTPM
Bronchus	2.2 nTPM

Basal squamous epithelial cells	10.8 nTPM
Esophagus	10.8 nTPM

Cholangiocytes	14.3 nTPM
Liver	14.3 nTPM

Undifferentiated cells	6.9 nTPM
Rectum	9.0 nTPM
Small intestine	6.0 nTPM
Colon	5.9 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC