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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:233.8 nTPM
HPA:233.8 nTPM
GTEx:163.5 nTPM
FANTOM5:278.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 233.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 233.8
2586 Male, age 75, left hemisphere 357.8
2828 Female, age 72, unknown 276.6
1833 Male, age 53, unknown 224.0
2219 Male, age 76, both hemispheres 220.4
1830 Male, age 51, unknown 219.5
1870 Female, age 42, unknown 218.7
2666 Male, age 74, left hemisphere 217.0
1827 Male, age 72, unknown 207.4
2411 Female, age 72, unknown 207.0
2019 Male, age 18, unknown 190.1
Dorsal raphe nucleus
nTPM: 228.6
2750 Male, age 76, both hemispheres 251.0
2016 Female, age 72, unknown 241.2
2047 Male, age 72, unknown 234.9
1828 Male, age 53, unknown 221.8
2298 Female, age 72, unknown 194.2
Inferior colliculus
nTPM: 214.2
2849 Male, age 72, unknown 234.2
1848 Female, age 42, unknown 225.7
1890 Male, age 53, unknown 211.9
2097 Female, age 72, unknown 185.0
Median raphe nucleus
nTPM: 195.5
2220 Male, age 76, midline 195.5
Pedunculopontine tegmental nucleus
nTPM: 190.8
2334 Male, age 80, both hemispheres 193.9
1921 Female, age 85, both hemispheres 192.8
2338 Male, age 61, both hemispheres 185.5
Periaquaductal grey, anterior
nTPM: 224.0
1795 Male, age 51, unknown 229.0
2502 Female, age 75, unknown 226.8
1947 Male, age 18, unknown 216.3
Periaquaductal grey, dorsal
nTPM: 217.1
1840 Male, age 53, unknown 231.7
2850 Male, age 76, both hemispheres 217.4
2464 Female, age 72, unknown 215.4
1831 Male, age 72, unknown 204.0
Periaquaductal grey, lateral
nTPM: 215.9
2053 Male, age 18, unknown 225.8
2140 Male, age 76, both hemispheres 217.4
2272 Male, age 74, both hemispheres 204.4
Pretectal area
nTPM: 212.9
2825 Male, age 18, unknown 233.1
2667 Female, age 75, unknown 222.1
1815 Male, age 53, unknown 220.0
2273 Male, age 74, both hemispheres 217.8
1944 Female, age 72, unknown 213.7
1817 Female, age 42, unknown 212.6
1816 Male, age 51, unknown 210.5
2316 Male, age 76, right hemisphere 209.8
2407 Male, age 75, both hemispheres 209.5
2007 Male, age 72, unknown 196.6
2224 Female, age 72, unknown 196.4
Red nucleus
nTPM: 229.7
2769 Male, age 72, unknown 251.9
2227 Male, age 72, unknown 250.6
2503 Female, age 72, unknown 247.9
2588 Male, age 74, left hemisphere 239.3
2584 Male, age 75, left hemisphere 235.7
2823 Male, age 76, right hemisphere 232.4
1904 Male, age 53, unknown 229.9
1954 Female, age 42, unknown 223.0
1865 Male, age 51, unknown 217.0
1821 Female, age 72, unknown 214.0
2785 Male, age 18, unknown 212.6
2725 Female, age 75, unknown 201.7
Substantia nigra
nTPM: 216.1
2699 Male, age 18, unknown 254.3
2583 Male, age 75, right hemisphere 232.9
1916 Female, age 42, unknown 232.0
1851 Male, age 51, unknown 225.0
2665 Male, age 74, both hemispheres 224.1
2590 Female, age 75, unknown 216.1
1889 Female, age 72, unknown 202.7
1941 Male, age 53, unknown 197.9
2241 Male, age 72, unknown 190.8
2409 Female, age 72, unknown 185.4
Superior colliculus
nTPM: 230.8
2664 Male, age 75, both hemispheres 301.7
2668 Female, age 75, unknown 244.1
1995 Male, age 72, unknown 243.1
1913 Female, age 42, unknown 232.2
1839 Male, age 51, unknown 227.8
2261 Male, age 18, unknown 227.4
1796 Male, age 53, unknown 221.9
2587 Male, age 74, left hemisphere 212.9
2087 Female, age 72, unknown 204.0
1895 Male, age 76, right hemisphere 193.1
Ventral tegmental area
nTPM: 219.6
2021 Male, age 53, unknown 232.0
2223 Female, age 72, unknown 228.3
1942 Male, age 51, unknown 227.2
1915 Female, age 42, unknown 221.3
2410 Female, age 72, unknown 205.6
2218 Male, age 76, both hemispheres 203.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 163.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 163.5
Samples: 139

Max nTPM: 296.1
Min nTPM: 50.6
Std nTPM: 50.3
Median nTPM: 156.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 296.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 292.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 292.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 282.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 272.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 267.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 263.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 262.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 256.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 254.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 251.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 278.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 278.0
FF:10158-103A5 76 years, female 278.0

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