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ATXN1L
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.3 nTPM
HPA:9.3 nTPM
GTEx:7.7 nTPM
FANTOM5:21.3 Scaled Tags Per Million
Pig:8.4 nTPM
Mouse:10.6 nTPM

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 9.3
Sample id Sample description nTPM
Hippocampus
nTPM: 9.0
2529 Female, age 94, left hemisphere 9.6
2621 Female, age 67, right hemisphere 9.5
2148 Female, age 91, left hemisphere 9.1
1855 Male, age 76, left hemisphere 8.7
1898 Male, age 80, left hemisphere 8.5
1911 Female, age 85, right hemisphere 8.5
Dentate gyrus
nTPM: 8.6
2530 Female, age 94, left hemisphere 9.3
2531 Female, age 67, both hemispheres 9.0
2010 Male, age 76, both hemispheres 8.7
2246 Female, age 85, both hemispheres 8.5
1927 Female, age 91, both hemispheres 8.4
2528 Male, age 74, both hemispheres 7.8
Entorhinal gyrus
nTPM: 9.3
2686 Male, age 75, right hemisphere 11.1
2117 Female, age 91, right hemisphere 10.1
2764 Male, age 80, right hemisphere 9.0
1938 Female, age 85, left hemisphere 8.8
1787 Male, age 76, left hemisphere 8.5
2613 Female, age 94, left hemisphere 8.5
Hippocampus, CA1
nTPM: 8.7
2749 Male, age 80, left hemisphere 9.5
2527 Male, age 74, both hemispheres 8.8
2045 Male, age 76, both hemispheres 8.5
1873 Female, age 85, both hemispheres 8.4
2082 Female, age 91, right hemisphere 8.2
Hippocampus, CA2
nTPM: 8.5
1963 Male, age 80, left hemisphere 9.8
2113 Female, age 91, right hemisphere 8.7
1892 Male, age 76, both hemispheres 8.6
2437 Female, age 94, left hemisphere 8.2
1940 Female, age 85, left hemisphere 8.1
2249 Male, age 74, both hemispheres 7.2
Hippocampus, CA3
nTPM: 8.8
2861 Female, age 67, both hemispheres 9.9
1867 Male, age 76, both hemispheres 9.5
1891 Female, age 85, both hemispheres 9.1
2137 Male, age 80, left hemisphere 9.1
2620 Female, age 94, left hemisphere 8.7
2436 Male, age 74, both hemispheres 6.4
Parahippocampal cortex
nTPM: 8.4
2692 Male, age 74, both hemispheres 9.7
2532 Female, age 72, left hemisphere 9.3
1850 Male, age 80, both hemispheres 8.8
2622 Female, age 67, right hemisphere 8.7
2245 Female, age 91, both hemispheres 8.6
1990 Female, age 91, right hemisphere 8.3
1933 Female, age 85, both hemispheres 8.1
2018 Male, age 76, both hemispheres 7.7
2250 Female, age 67, right hemisphere 7.4
2693 Female, age 94, both hemispheres 7.4
Perirhinal gyrus
nTPM: 8.4
1794 Male, age 80, right hemisphere 9.0
2848 Male, age 76, right hemisphere 8.9
1847 Female, age 91, left hemisphere 8.4
1841 Female, age 85, right hemisphere 8.3
2521 Female, age 94, right hemisphere 7.4
Subiculum
nTPM: 9.1
2438 Female, age 94, left hemisphere 10.3
1901 Male, age 80, both hemispheres 9.3
2042 Male, age 76, both hemispheres 9.2
2619 Male, age 74, both hemispheres 8.7
2729 Female, age 91, right hemisphere 8.7
1977 Female, age 85, both hemispheres 8.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 7.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 7.7
Samples: 197

Max nTPM: 16.8
Min nTPM: 3.6
Std nTPM: 2.1
Median nTPM: 7.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 16.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 15.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 14.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 14.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 13.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 13.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 12.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 12.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 12.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 12.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 12.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 21.3
FF:10153-102I9 76 years, female 23.7
FF:10169-103B7 60 years, female 18.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 8.5
Samples: 4

Max nTPM: 10.0
Min nTPM: 6.4
Sample A Female 10.0
Sample B Female 8.0
Sample C Male 9.4
Sample D Male 6.4
Entorhinal cortex
nTPM: 7.9
Samples: 4

Max nTPM: 8.8
Min nTPM: 7.3
Sample A Female 8.8
Sample B Female 7.3
Sample C Male 8.0
Sample D Male 7.5
Subiculum
nTPM: 8.3
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.6
Sample A Female 9.7
Sample B Female 7.8
Sample C Male 8.0
Sample D Male 7.6
Ventral hippocampus
nTPM: 8.1
Samples: 4

Max nTPM: 9.9
Min nTPM: 5.9
Sample A Female 7.8
Sample B Female 5.9
Sample C Male 9.9
Sample D Male 8.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 10.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.6
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.5
Sample A Male 10.3
Sample B Male 10.6
Sample C Female 9.5
Sample D Female 12.1
Hippocampal formation
nTPM: 10.3
Samples: 4

Max nTPM: 12.2
Min nTPM: 8.9
Sample A Male 8.9
Sample B Male 10.9
Sample C Female 12.2
Sample D Female 9.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.