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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:375.4 nTPM
HPA:375.4 nTPM
GTEx:237.0 nTPM
FANTOM5:278.4 Scaled Tags Per Million
Mouse:87.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 375.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 354.1
1870 Female, age 42, unknown 361.6
1830 Male, age 51, unknown 356.8
1833 Male, age 53, unknown 356.5
2411 Female, age 72, unknown 356.2
2828 Female, age 72, unknown 355.1
2666 Male, age 74, left hemisphere 354.2
1827 Male, age 72, unknown 353.0
2019 Male, age 18, unknown 351.3
2586 Male, age 75, left hemisphere 348.6
2219 Male, age 76, both hemispheres 347.7
Dorsal raphe nucleus
nTPM: 366.3
2047 Male, age 72, unknown 371.7
2298 Female, age 72, unknown 368.1
2016 Female, age 72, unknown 365.2
2750 Male, age 76, both hemispheres 364.8
1828 Male, age 53, unknown 361.9
Inferior colliculus
nTPM: 356.6
2097 Female, age 72, unknown 359.2
1890 Male, age 53, unknown 358.4
2849 Male, age 72, unknown 354.9
1848 Female, age 42, unknown 354.1
Median raphe nucleus
nTPM: 373.5
2220 Male, age 76, midline 373.5
Pedunculopontine tegmental nucleus
nTPM: 375.4
2338 Male, age 61, both hemispheres 395.6
2334 Male, age 80, both hemispheres 370.0
1921 Female, age 85, both hemispheres 360.7
Periaquaductal grey, anterior
nTPM: 358.0
2502 Female, age 75, unknown 362.1
1947 Male, age 18, unknown 357.7
1795 Male, age 51, unknown 354.1
Periaquaductal grey, dorsal
nTPM: 360.3
2850 Male, age 76, both hemispheres 368.8
1840 Male, age 53, unknown 359.1
2464 Female, age 72, unknown 357.5
1831 Male, age 72, unknown 355.6
Periaquaductal grey, lateral
nTPM: 359.3
2053 Male, age 18, unknown 360.3
2140 Male, age 76, both hemispheres 359.4
2272 Male, age 74, both hemispheres 358.1
Pretectal area
nTPM: 356.3
2224 Female, age 72, unknown 365.1
1817 Female, age 42, unknown 363.4
2667 Female, age 75, unknown 359.1
2273 Male, age 74, both hemispheres 357.8
1815 Male, age 53, unknown 357.1
2007 Male, age 72, unknown 356.8
2825 Male, age 18, unknown 356.1
2316 Male, age 76, right hemisphere 354.1
1816 Male, age 51, unknown 352.8
1944 Female, age 72, unknown 351.5
2407 Male, age 75, both hemispheres 345.2
Red nucleus
nTPM: 358.8
1821 Female, age 72, unknown 371.9
1865 Male, age 51, unknown 365.4
1904 Male, age 53, unknown 365.3
1954 Female, age 42, unknown 363.4
2503 Female, age 72, unknown 361.3
2769 Male, age 72, unknown 360.5
2823 Male, age 76, right hemisphere 358.5
2227 Male, age 72, unknown 358.1
2785 Male, age 18, unknown 353.2
2725 Female, age 75, unknown 353.1
2588 Male, age 74, left hemisphere 351.0
2584 Male, age 75, left hemisphere 344.4
Substantia nigra
nTPM: 366.1
2699 Male, age 18, unknown 384.4
1851 Male, age 51, unknown 378.0
1916 Female, age 42, unknown 377.1
2665 Male, age 74, both hemispheres 364.1
2590 Female, age 75, unknown 363.0
1889 Female, age 72, unknown 362.7
2409 Female, age 72, unknown 362.1
2241 Male, age 72, unknown 360.4
1941 Male, age 53, unknown 357.2
2583 Male, age 75, right hemisphere 351.7
Superior colliculus
nTPM: 354.3
2587 Male, age 74, left hemisphere 370.0
1913 Female, age 42, unknown 359.7
1995 Male, age 72, unknown 358.5
1796 Male, age 53, unknown 357.9
2668 Female, age 75, unknown 354.2
1839 Male, age 51, unknown 354.1
1895 Male, age 76, right hemisphere 348.7
2087 Female, age 72, unknown 347.4
2261 Male, age 18, unknown 347.4
2664 Male, age 75, both hemispheres 345.0
Ventral tegmental area
nTPM: 370.0
2223 Female, age 72, unknown 380.4
2410 Female, age 72, unknown 378.6
1915 Female, age 42, unknown 372.3
2218 Male, age 76, both hemispheres 367.6
2021 Male, age 53, unknown 365.3
1942 Male, age 51, unknown 355.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 237.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 237.0
Samples: 139

Max nTPM: 460.0
Min nTPM: 104.7
Std nTPM: 67.7
Median nTPM: 221.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 460.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 444.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 444.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 418.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 415.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 397.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 371.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 366.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 357.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 355.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 328.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 278.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 278.4
FF:10158-103A5 76 years, female 278.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 87.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.8
Samples: 4

Max nTPM: 93.0
Min nTPM: 82.1
Sample A Male 93.0
Sample B Male 82.1
Sample C Female 84.6
Sample D Female 91.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
631702 Antisense, RP_040907_01_A02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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