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ZNF688
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.9 nTPM
HPA:16.9 nTPM
GTEx:7.7 nTPM
FANTOM5:10.7 Scaled Tags Per Million
Pig:7.0 nTPM
Mouse:2.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
2219 Male, age 76, both hemispheres 18.4
1830 Male, age 51, unknown 18.2
2019 Male, age 18, unknown 17.3
2828 Female, age 72, unknown 17.2
2411 Female, age 72, unknown 16.9
1870 Female, age 42, unknown 16.5
2586 Male, age 75, left hemisphere 16.4
1833 Male, age 53, unknown 15.9
2666 Male, age 74, left hemisphere 15.5
1827 Male, age 72, unknown 15.1
Dorsal raphe nucleus
nTPM: 15.2
2016 Female, age 72, unknown 16.2
2750 Male, age 76, both hemispheres 16.1
1828 Male, age 53, unknown 14.9
2298 Female, age 72, unknown 14.9
2047 Male, age 72, unknown 14.0
Inferior colliculus
nTPM: 15.4
2097 Female, age 72, unknown 16.1
1890 Male, age 53, unknown 16.0
1848 Female, age 42, unknown 14.9
2849 Male, age 72, unknown 14.7
Median raphe nucleus
nTPM: 16.3
2220 Male, age 76, midline 16.3
Pedunculopontine tegmental nucleus
nTPM: 15.7
2338 Male, age 61, both hemispheres 16.8
2334 Male, age 80, both hemispheres 15.5
1921 Female, age 85, both hemispheres 14.8
Periaquaductal grey, anterior
nTPM: 16.9
2502 Female, age 75, unknown 18.2
1795 Male, age 51, unknown 16.8
1947 Male, age 18, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 15.6
2464 Female, age 72, unknown 16.5
1831 Male, age 72, unknown 15.9
2850 Male, age 76, both hemispheres 15.0
1840 Male, age 53, unknown 14.9
Periaquaductal grey, lateral
nTPM: 16.7
2272 Male, age 74, both hemispheres 17.9
2053 Male, age 18, unknown 16.3
2140 Male, age 76, both hemispheres 15.8
Pretectal area
nTPM: 15.7
2316 Male, age 76, right hemisphere 16.8
2407 Male, age 75, both hemispheres 16.7
1816 Male, age 51, unknown 16.5
2273 Male, age 74, both hemispheres 16.3
2667 Female, age 75, unknown 15.8
1944 Female, age 72, unknown 15.4
2224 Female, age 72, unknown 15.4
1815 Male, age 53, unknown 15.2
2007 Male, age 72, unknown 15.2
2825 Male, age 18, unknown 15.1
1817 Female, age 42, unknown 14.7
Red nucleus
nTPM: 16.7
2588 Male, age 74, left hemisphere 18.1
2503 Female, age 72, unknown 18.0
1904 Male, age 53, unknown 17.7
2785 Male, age 18, unknown 17.7
2769 Male, age 72, unknown 17.5
2823 Male, age 76, right hemisphere 16.8
1865 Male, age 51, unknown 16.6
1954 Female, age 42, unknown 16.6
2227 Male, age 72, unknown 16.5
2725 Female, age 75, unknown 15.8
2584 Male, age 75, left hemisphere 15.3
1821 Female, age 72, unknown 14.2
Substantia nigra
nTPM: 15.3
2241 Male, age 72, unknown 16.3
2409 Female, age 72, unknown 16.3
1851 Male, age 51, unknown 15.6
2583 Male, age 75, right hemisphere 15.6
2665 Male, age 74, both hemispheres 15.6
2590 Female, age 75, unknown 15.5
1941 Male, age 53, unknown 15.0
2699 Male, age 18, unknown 14.7
1889 Female, age 72, unknown 14.5
1916 Female, age 42, unknown 14.3
Superior colliculus
nTPM: 16.3
1995 Male, age 72, unknown 18.9
2261 Male, age 18, unknown 17.6
1913 Female, age 42, unknown 17.1
2087 Female, age 72, unknown 16.8
1796 Male, age 53, unknown 16.2
2664 Male, age 75, both hemispheres 16.1
2668 Female, age 75, unknown 15.7
1895 Male, age 76, right hemisphere 15.4
2587 Male, age 74, left hemisphere 14.7
1839 Male, age 51, unknown 14.6
Ventral tegmental area
nTPM: 16.1
2021 Male, age 53, unknown 17.3
2223 Female, age 72, unknown 17.3
2218 Male, age 76, both hemispheres 15.8
2410 Female, age 72, unknown 15.7
1942 Male, age 51, unknown 15.6
1915 Female, age 42, unknown 15.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.7
Samples: 139

Max nTPM: 14.9
Min nTPM: 3.0
Std nTPM: 2.1
Median nTPM: 7.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 14.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 13.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 12.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 12.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 12.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 12.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 12.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 11.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 11.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 10.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.7
FF:10158-103A5 76 years, female 10.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.0
Pig sample Sample description nTPM
Midbrain
nTPM: 6.7
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.7
Sample A Female 8.2
Sample B Female 5.7
Sample C Male 7.2
Sample D Male 5.8
Periaqueductal gray
nTPM: 5.9
Samples: 3

Max nTPM: 6.1
Min nTPM: 5.6
Sample B Female 6.1
Sample C Male 6.1
Sample D Male 5.6
Substantia nigra
nTPM: 6.7
Samples: 4

Max nTPM: 7.8
Min nTPM: 5.7
Sample A Female 7.8
Sample B Female 6.4
Sample C Male 5.7
Sample D Male 6.8
Superior colliculi
nTPM: 7.1
Samples: 4

Max nTPM: 7.2
Min nTPM: 6.8
Sample A Female 7.0
Sample B Female 7.2
Sample C Male 7.2
Sample D Male 6.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.1
Samples: 4

Max nTPM: 3.1
Min nTPM: 0.0
Sample A Male 2.6
Sample B Male 3.1
Sample C Female 0.0
Sample D Female 2.8

Contact

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.