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HLA-DPA1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:2.0 nTPM
HPA:2.0 nTPM
GTEx:33.2 nTPM
FANTOM5:2.4 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA017967
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.6
2846 Female, age 79, unknown 2.3
2289 Male, age 61, right hemisphere 2.0
1781 Male, age 74, unknown 1.9
2290 Female, age 72, unknown 1.6
1857 Female, age 85, left hemisphere 1.5
2481 Female, age 94, left hemisphere 1.5
2288 Male, age 75, left hemisphere 1.4
1854 Male, age 80, left hemisphere 1.0
Claustrum
nTPM: 1.4
2198 Male, age 80, both hemispheres 1.7
2292 Female, age 85, both hemispheres 1.7
1956 Male, age 74, unknown 1.6
2568 Male, age 61, both hemispheres 1.4
2645 Female, age 72, unknown 1.4
2284 Female, age 91, both hemispheres 1.3
2392 Female, age 94, both hemispheres 1.2
2196 Female, age 79, unknown 1.1
2491 Male, age 75, both hemispheres 1.1
Globus pallidus, externus
nTPM: 2.0
2395 Male, age 75, both hemispheres 2.6
2772 Female, age 79, unknown 2.5
1996 Male, age 80, right hemisphere 2.3
2567 Female, age 72, unknown 1.5
2646 Male, age 61, right hemisphere 1.3
Globus pallidus, internus
nTPM: 1.8
2037 Male, age 80, right hemisphere 2.3
2778 Female, age 91, both hemispheres 2.1
1818 Male, age 74, unknown 2.0
2111 Female, age 85, right hemisphere 1.8
2483 Female, age 94, right hemisphere 1.7
2566 Female, age 72, unknown 1.5
2287 Male, age 75, right hemisphere 1.4
Nucleus accumbens
nTPM: 1.6
2391 Female, age 94, left hemisphere 2.0
2698 Female, age 72, unknown 1.9
2732 Male, age 80, right hemisphere 1.9
2286 Male, age 75, left hemisphere 1.5
1783 Male, age 74, unknown 1.4
1856 Female, age 91, right hemisphere 1.3
1806 Female, age 85, left hemisphere 1.2
2824 Male, age 61, right hemisphere 1.2
Nucleus basalis of Meynert
nTPM: 1.9
2821 Male, age 75, both hemispheres 2.3
2393 Male, age 80, right hemisphere 1.9
2484 Female, age 94, left hemisphere 1.8
2569 Male, age 61, both hemispheres 1.4
Nucleus of the diagonal band
nTPM: 1.7
1812 Female, age 91, both hemispheres 2.0
2775 Male, age 80, right hemisphere 1.9
2029 Male, age 61, right hemisphere 1.7
1979 Male, age 74, unknown 1.6
2195 Female, age 85, both hemispheres 1.4
Olfactory tubercle
nTPM: 1.6
1846 Male, age 80, right hemisphere 2.1
2487 Female, age 94, left hemisphere 1.9
2856 Male, age 75, right hemisphere 1.3
1998 Female, age 91, both hemispheres 1.2
Putamen
nTPM: 1.4
2482 Female, age 94, left hemisphere 2.2
2466 Female, age 79, unknown 1.7
2489 Female, age 72, unknown 1.7
1829 Male, age 74, unknown 1.3
1838 Male, age 80, right hemisphere 1.1
1937 Female, age 91, right hemisphere 1.0
2647 Male, age 75, left hemisphere 1.0
Septal nuclei
nTPM: 1.7
2199 Male, age 80, right hemisphere 2.5
2629 Female, age 94, right hemisphere 2.2
2394 Male, age 61, left hemisphere 1.8
1960 Male, age 74, unknown 1.7
2009 Female, age 91, both hemispheres 1.5
2031 Female, age 72, unknown 1.5
2059 Female, age 85, both hemispheres 1.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 33.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.2
Samples: 246

Max nTPM: 190.6
Min nTPM: 4.6
Std nTPM: 29.0
Median nTPM: 24.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 190.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 156.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 152.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 148.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 141.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 124.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 114.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 112.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 100.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 99.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 97.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.8
Samples: 246

Max nTPM: 136.7
Min nTPM: 2.8
Std nTPM: 20.7
Median nTPM: 15.5
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 136.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 113.9
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 105.7
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 97.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 93.3
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 92.0
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 88.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 84.3
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 73.4
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 72.0
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 71.8
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Brain - Putamen (basal ganglia)
Average nTPM: 24.4
Samples: 205

Max nTPM: 105.5
Min nTPM: 4.4
Std nTPM: 17.1
Median nTPM: 19.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 105.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 101.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 91.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 87.2
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 81.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 70.1
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 66.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 61.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 61.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 61.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 59.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.9
FF:10164-103B2 76 years, female 0.9
Globus pallidus
Scaled Tags Per Million: 2.4
FF:10161-103A8 76 years, female 3.2
FF:10175-103C4 60 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 1.2
FF:10037-101F1 23-56 years, mixed 1.2
Putamen
Scaled Tags Per Million: 0.6
FF:10176-103C5 60 years, female 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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