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SMIM26
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:96.2 nTPM
HPA:96.2 nTPM
GTEx:78.9 nTPM
FANTOM5:94.2 Scaled Tags Per Million
Pig:55.6 nTPM
Mouse:91.5 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 96.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 95.6
2846 Female, age 79, unknown 100.9
1857 Female, age 85, left hemisphere 97.2
2288 Male, age 75, left hemisphere 96.5
1854 Male, age 80, left hemisphere 96.0
2481 Female, age 94, left hemisphere 95.7
2290 Female, age 72, unknown 95.0
1781 Male, age 74, unknown 93.1
2289 Male, age 61, right hemisphere 90.5
Claustrum
nTPM: 90.6
2392 Female, age 94, both hemispheres 93.3
2196 Female, age 79, unknown 92.6
1956 Male, age 74, unknown 92.4
2198 Male, age 80, both hemispheres 91.3
2645 Female, age 72, unknown 89.9
2491 Male, age 75, both hemispheres 89.6
2568 Male, age 61, both hemispheres 89.3
2292 Female, age 85, both hemispheres 88.8
2284 Female, age 91, both hemispheres 88.5
Globus pallidus, externus
nTPM: 92.1
2772 Female, age 79, unknown 97.8
1996 Male, age 80, right hemisphere 96.1
2395 Male, age 75, both hemispheres 94.3
2646 Male, age 61, right hemisphere 87.0
2567 Female, age 72, unknown 85.1
Globus pallidus, internus
nTPM: 95.0
2287 Male, age 75, right hemisphere 102.1
2778 Female, age 91, both hemispheres 98.0
1818 Male, age 74, unknown 96.2
2037 Male, age 80, right hemisphere 93.9
2483 Female, age 94, right hemisphere 93.8
2111 Female, age 85, right hemisphere 91.2
2566 Female, age 72, unknown 89.7
Nucleus accumbens
nTPM: 96.2
2391 Female, age 94, left hemisphere 99.8
1856 Female, age 91, right hemisphere 99.6
2286 Male, age 75, left hemisphere 99.2
2698 Female, age 72, unknown 97.7
1806 Female, age 85, left hemisphere 95.1
1783 Male, age 74, unknown 93.9
2824 Male, age 61, right hemisphere 93.0
2732 Male, age 80, right hemisphere 91.4
Nucleus basalis of Meynert
nTPM: 92.7
2821 Male, age 75, both hemispheres 94.8
2484 Female, age 94, left hemisphere 93.6
2393 Male, age 80, right hemisphere 93.4
2569 Male, age 61, both hemispheres 88.8
Nucleus of the diagonal band
nTPM: 93.5
1812 Female, age 91, both hemispheres 95.8
2775 Male, age 80, right hemisphere 94.1
2029 Male, age 61, right hemisphere 93.4
1979 Male, age 74, unknown 93.0
2195 Female, age 85, both hemispheres 91.3
Olfactory tubercle
nTPM: 92.0
1846 Male, age 80, right hemisphere 96.9
1998 Female, age 91, both hemispheres 92.3
2856 Male, age 75, right hemisphere 91.4
2487 Female, age 94, left hemisphere 87.4
Putamen
nTPM: 93.9
2482 Female, age 94, left hemisphere 98.3
2466 Female, age 79, unknown 97.5
1937 Female, age 91, right hemisphere 96.3
1838 Male, age 80, right hemisphere 95.4
1829 Male, age 74, unknown 92.9
2647 Male, age 75, left hemisphere 89.2
2489 Female, age 72, unknown 88.0
Septal nuclei
nTPM: 92.8
2031 Female, age 72, unknown 96.3
2629 Female, age 94, right hemisphere 94.8
1960 Male, age 74, unknown 93.6
2009 Female, age 91, both hemispheres 93.1
2199 Male, age 80, right hemisphere 91.6
2394 Male, age 61, left hemisphere 91.3
2059 Female, age 85, both hemispheres 88.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 78.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 75.2
Samples: 246

Max nTPM: 187.4
Min nTPM: 42.6
Std nTPM: 20.1
Median nTPM: 70.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 187.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 164.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 158.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 144.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 143.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 134.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 133.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 127.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 114.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 110.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 110.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 77.8
Samples: 246

Max nTPM: 173.1
Min nTPM: 45.4
Std nTPM: 18.2
Median nTPM: 74.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 173.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 168.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 145.8
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 129.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 128.8
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 126.0
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 123.2
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 117.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 116.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 116.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 112.7
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Brain - Putamen (basal ganglia)
Average nTPM: 78.9
Samples: 205

Max nTPM: 149.2
Min nTPM: 44.3
Std nTPM: 19.1
Median nTPM: 75.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 149.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 133.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 133.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 129.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 129.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 129.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 123.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 121.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 118.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 117.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 114.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.6
FF:10164-103B2 76 years, female 63.6
Globus pallidus
Scaled Tags Per Million: 94.2
FF:10175-103C4 60 years, female 129.4
FF:10161-103A8 76 years, female 59.0
Nucleus accumbens
Scaled Tags Per Million: 45.5
FF:10037-101F1 23-56 years, mixed 45.5
Putamen
Scaled Tags Per Million: 79.9
FF:10176-103C5 60 years, female 79.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 55.6
Pig sample Sample description nTPM
Caudate
nTPM: 45.6
Samples: 4

Max nTPM: 53.2
Min nTPM: 38.6
Sample A Female 38.6
Sample B Female 53.2
Sample C Male 49.1
Sample D Male 41.5
Putamen
nTPM: 55.6
Samples: 4

Max nTPM: 70.6
Min nTPM: 43.7
Sample A Female 60.5
Sample B Female 43.7
Sample C Male 70.6
Sample D Male 47.6
Septum
nTPM: 55.6
Samples: 4

Max nTPM: 60.8
Min nTPM: 50.0
Sample A Female 60.8
Sample B Female 51.4
Sample C Male 60.0
Sample D Male 50.0
Ventral pallidum
nTPM: 48.0
Samples: 4

Max nTPM: 60.8
Min nTPM: 42.1
Sample A Female 42.1
Sample B Female 60.8
Sample C Male 46.8
Sample D Male 42.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 91.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 80.7
Samples: 4

Max nTPM: 84.6
Min nTPM: 78.1
Sample A Male 78.1
Sample B Male 81.3
Sample C Female 78.6
Sample D Female 84.6
Septum
nTPM: 91.5
Samples: 4

Max nTPM: 97.5
Min nTPM: 87.2
Sample A Male 89.7
Sample B Male 97.5
Sample C Female 91.6
Sample D Female 87.2
Ventral forebrain
nTPM: 85.4
Samples: 4

Max nTPM: 97.4
Min nTPM: 76.4
Sample A Male 80.3
Sample B Male 76.4
Sample C Female 97.4
Sample D Female 87.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
70295876 Antisense, RP_050531_04_B03, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
70295876 Antisense, RP_050531_04_B03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.