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SMIM26
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.6 nTPM
HPA:93.6 nTPM
GTEx:77.5 nTPM
FANTOM5:79.5 Scaled Tags Per Million
Pig:56.6 nTPM
Mouse:96.2 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 93.6
Sample id Sample description nTPM
Hippocampus
nTPM: 92.2
1898 Male, age 80, left hemisphere 95.6
1855 Male, age 76, left hemisphere 94.9
1911 Female, age 85, right hemisphere 91.9
2621 Female, age 67, right hemisphere 90.5
2529 Female, age 94, left hemisphere 90.4
2148 Female, age 91, left hemisphere 89.7
Dentate gyrus
nTPM: 92.2
1927 Female, age 91, both hemispheres 94.9
2010 Male, age 76, both hemispheres 94.5
2246 Female, age 85, both hemispheres 92.8
2528 Male, age 74, both hemispheres 91.9
2530 Female, age 94, left hemisphere 90.3
2531 Female, age 67, both hemispheres 88.5
Entorhinal gyrus
nTPM: 90.4
1938 Female, age 85, left hemisphere 93.3
1787 Male, age 76, left hemisphere 91.3
2117 Female, age 91, right hemisphere 90.4
2764 Male, age 80, right hemisphere 90.4
2613 Female, age 94, left hemisphere 89.0
2686 Male, age 75, right hemisphere 88.2
Hippocampus, CA1
nTPM: 92.9
2749 Male, age 80, left hemisphere 97.6
1873 Female, age 85, both hemispheres 93.5
2527 Male, age 74, both hemispheres 92.1
2045 Male, age 76, both hemispheres 91.2
2082 Female, age 91, right hemisphere 89.9
Hippocampus, CA2
nTPM: 92.1
1892 Male, age 76, both hemispheres 93.6
2249 Male, age 74, both hemispheres 93.6
1963 Male, age 80, left hemisphere 92.8
2437 Female, age 94, left hemisphere 92.6
1940 Female, age 85, left hemisphere 90.3
2113 Female, age 91, right hemisphere 89.7
Hippocampus, CA3
nTPM: 92.6
2436 Male, age 74, both hemispheres 98.7
2137 Male, age 80, left hemisphere 94.1
1867 Male, age 76, both hemispheres 93.7
1891 Female, age 85, both hemispheres 93.1
2620 Female, age 94, left hemisphere 90.7
2861 Female, age 67, both hemispheres 85.5
Parahippocampal cortex
nTPM: 91.4
1850 Male, age 80, both hemispheres 93.6
2018 Male, age 76, both hemispheres 93.5
1933 Female, age 85, both hemispheres 92.4
2693 Female, age 94, both hemispheres 91.5
1990 Female, age 91, right hemisphere 91.4
2250 Female, age 67, right hemisphere 91.0
2532 Female, age 72, left hemisphere 90.9
2692 Male, age 74, both hemispheres 90.7
2245 Female, age 91, both hemispheres 89.5
2622 Female, age 67, right hemisphere 89.0
Perirhinal gyrus
nTPM: 93.6
1794 Male, age 80, right hemisphere 95.7
1841 Female, age 85, right hemisphere 95.7
1847 Female, age 91, left hemisphere 93.8
2521 Female, age 94, right hemisphere 91.8
2848 Male, age 76, right hemisphere 91.1
Subiculum
nTPM: 92.6
2438 Female, age 94, left hemisphere 97.5
1977 Female, age 85, both hemispheres 94.0
1901 Male, age 80, both hemispheres 92.9
2042 Male, age 76, both hemispheres 91.8
2619 Male, age 74, both hemispheres 90.3
2729 Female, age 91, right hemisphere 89.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 77.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 77.5
Samples: 197

Max nTPM: 220.5
Min nTPM: 43.8
Std nTPM: 19.6
Median nTPM: 75.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 220.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 128.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 127.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 126.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 123.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 122.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 120.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 119.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 117.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 113.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 111.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 79.5
FF:10169-103B7 60 years, female 96.2
FF:10153-102I9 76 years, female 62.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 56.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 56.6
Samples: 4

Max nTPM: 86.1
Min nTPM: 34.2
Sample A Female 86.1
Sample B Female 60.3
Sample C Male 45.8
Sample D Male 34.2
Entorhinal cortex
nTPM: 41.0
Samples: 4

Max nTPM: 54.6
Min nTPM: 26.5
Sample A Female 41.0
Sample B Female 54.6
Sample C Male 41.7
Sample D Male 26.5
Subiculum
nTPM: 37.9
Samples: 4

Max nTPM: 48.1
Min nTPM: 32.1
Sample A Female 48.1
Sample B Female 35.3
Sample C Male 32.1
Sample D Male 36.1
Ventral hippocampus
nTPM: 47.4
Samples: 4

Max nTPM: 54.1
Min nTPM: 36.1
Sample A Female 54.1
Sample B Female 36.1
Sample C Male 53.1
Sample D Male 46.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 96.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 76.6
Samples: 4

Max nTPM: 89.0
Min nTPM: 70.5
Sample A Male 71.1
Sample B Male 75.8
Sample C Female 89.0
Sample D Female 70.5
Hippocampal formation
nTPM: 96.2
Samples: 4

Max nTPM: 113.2
Min nTPM: 89.3
Sample A Male 113.2
Sample B Male 92.1
Sample C Female 90.3
Sample D Female 89.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
70295876 Antisense, RP_050531_04_B03, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

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